O-miner

Project ID: Example_estimate_U133A

Summary

Platform:	Genechip Human Genome U133A
Normalisation:	Method: GC-RMA
Normalisation:	Data:
Filter:	Method: Standard deviation
Filter:	Data:
Download results:

Quality Control

ArrayMVout Report

Excluded samples (in red):		0
Number of Samples:		157
QC Plots	PLM plots	NUSE	RLE	RNA degradation

FileName	Target	Sample	ABackground	ScaleFactor	Present	HSAC07	GAPDH	NUSE	RLE	RLE IQR	RNAslope
Summary Report
GSM203261.CEL	T	R421P00048	76.95	0.29	52.09	1.25	0.96	0.99	-0.05	0.32	1.82
GSM203262.CEL	T	R422P00092	87.36	0.24	51.46	1.28	0.99	0.99	-0.03	0.29	2.32
GSM203263.CEL	N	R423P00094	89.35	0.26	51.47	1.22	0.98	0.99	-0.04	0.30	2.59
GSM203264.CEL	N	R424P00100	69.53	0.44	50.64	1.28	0.89	0.99	-0.00	0.29	1.97
GSM203265.CEL	T	R425P00102	80.12	0.28	50.61	1.33	0.99	1.00	-0.03	0.32	1.78
GSM203266.CEL	N	R426P00145	77.75	0.37	51.86	1.11	0.86	1.00	-0.02	0.34	2.52
GSM203267.CEL	T	R427P00146	80.57	0.36	48.72	1.37	1.07	0.99	-0.00	0.30	2.06
GSM203268.CEL	N	R428P00155	77.25	0.31	54.62	1.06	0.88	0.99	-0.08	0.42	3.05
GSM203269.CEL	N	R429P00163	77.66	0.45	46.65	1.20	0.91	0.99	-0.00	0.30	2.66
GSM203270.CEL	N	R430P00182	85.71	0.27	53.04	1.37	1.05	0.99	-0.09	0.42	2.96
GSM203271.CEL	N	R431P00183	82.69	0.31	50.82	1.23	0.97	0.99	-0.08	0.40	2.86
GSM203272.CEL	N	R432P00185	83.80	0.37	51.31	1.20	0.87	0.99	-0.04	0.31	2.24
GSM203273.CEL	T	R433P00224	77.50	0.47	48.47	2.00	1.15	0.99	-0.02	0.28	2.91
GSM203274.CEL	T	R434P00230	73.94	0.39	51.73	1.45	1.06	0.98	-0.07	0.36	2.66
GSM203276.CEL	N	R436P00056	82.08	0.37	51.12	1.23	0.95	0.98	-0.02	0.23	2.76
GSM203277.CEL	N	R437P00057	79.39	0.37	48.07	1.52	1.11	0.99	-0.03	0.30	2.61
GSM203278.CEL	N	R438P00060	85.29	0.33	52.30	1.36	0.99	0.98	-0.04	0.29	2.96
GSM203279.CEL	N	R439P00089	84.31	0.28	52.57	1.16	0.87	0.99	-0.06	0.37	2.06
GSM203280.CEL	N	R440P00121	76.67	0.43	47.96	1.46	1.08	0.99	-0.01	0.30	2.83
GSM203281.CEL	T	R441P00225	83.08	0.37	49.48	1.65	0.99	0.99	-0.01	0.26	2.94
GSM203283.CEL	N	R456P00301	88.05	0.60	46.26	1.27	1.00	0.99	0.01	0.30	2.71
GSM203284.CEL	N	R457P00303	140.24	0.40	43.39	1.26	0.94	0.99	0.02	0.35	1.77
GSM203285.CEL	N	R458P00307	90.86	0.49	49.05	0.92	0.79	0.99	-0.03	0.41	2.23
GSM203286.CEL	N	R459P00309	116.72	0.39	48.00	1.13	0.89	0.99	0.03	0.29	2.40
GSM203288.CEL	N	R461P00322	104.96	0.36	50.80	1.21	0.92	0.99	-0.05	0.30	2.74
GSM203289.CEL	N	R462P00324	85.46	0.57	48.31	2.20	1.30	0.98	-0.03	0.28	3.09
GSM203290.CEL	N	R463P00344	97.42	0.50	46.13	5.64	2.24	0.99	0.01	0.29	4.49
GSM203291.CEL	T	R464P00422	100.96	0.38	47.20	4.23	1.79	0.99	-0.04	0.32	3.53
GSM203292.CEL	N	R465P00426	88.03	0.36	52.50	1.09	0.91	0.99	-0.07	0.41	3.65
GSM203293.CEL	N	R466P00431	81.77	0.48	48.46	1.08	0.89	0.98	-0.01	0.28	2.91
GSM203295.CEL	T	R468P00438	80.50	0.80	38.76	40.89	10.93	1.01	0.04	0.44	5.02
GSM203296.CEL	T	R469P00501	106.98	0.41	47.65	1.09	0.87	0.99	0.02	0.31	2.16
GSM203297.CEL	N	R481P00302	82.90	0.63	43.87	5.71	1.86	0.99	-0.01	0.31	3.54
GSM203298.CEL	N	R482P00304	81.00	0.72	41.59	1.68	1.27	1.00	0.00	0.42	2.39
GSM203300.CEL	N	R484P00306	88.95	0.43	49.80	1.48	1.24	0.98	-0.03	0.27	3.48
GSM203302.CEL	N	R487P00311	84.20	0.40	52.74	1.07	0.86	0.98	-0.07	0.36	3.10
GSM203303.CEL	N	R488P00312	93.47	0.36	49.75	1.24	0.95	0.98	-0.00	0.22	2.76
GSM203304.CEL	N	R489P00323	98.21	0.37	50.08	1.02	0.88	1.00	-0.01	0.32	1.93
GSM203306.CEL	N	R491P00345	97.97	0.37	51.13	2.49	1.32	1.00	-0.04	0.39	4.51
GSM203308.CEL	N	R493P00433	99.23	0.33	53.09	2.31	1.45	0.98	-0.05	0.39	3.51
GSM203309.CEL	T	R494P00442	104.69	0.30	47.03	1.18	1.01	0.99	-0.01	0.32	2.30
GSM203312.CEL	N	R521P00428	126.85	0.39	46.39	1.32	0.94	0.98	0.03	0.30	2.73
GSM203314.CEL	T	R523P00585	86.31	0.62	40.02	5.94	3.10	1.02	0.01	0.46	2.88
GSM203315.CEL	N	R524P00603	100.34	0.42	43.24	2.09	1.36	1.00	-0.00	0.37	2.43
GSM203316.CEL	N	R525P00604	107.47	0.51	41.45	10.15	4.30	1.02	-0.00	0.43	3.39
GSM203318.CEL	N	R527P00606	92.57	0.58	43.21	1.18	0.91	1.01	-0.04	0.32	2.08
GSM203319.CEL	N	R528P00607	106.94	0.27	49.58	1.24	0.94	0.99	-0.02	0.25	2.41
GSM203320.CEL	N	R529P00609	100.10	0.34	46.30	1.05	0.87	0.99	0.01	0.26	1.73
GSM203323.CEL	N	R532P00648	100.50	0.44	47.22	1.00	0.80	1.00	0.01	0.28	1.42
GSM203324.CEL	T	R533P00403	84.61	0.33	51.08	1.10	0.86	0.99	-0.04	0.37	1.81
GSM203325.CEL	N	R534P00429	70.96	0.84	45.54	2.99	1.53	1.00	-0.02	0.32	3.75
GSM203327.CEL	N	R536P00445	86.86	0.49	51.11	1.12	0.84	0.99	-0.05	0.40	2.92
GSM203328.CEL	N	R537P00446	63.89	0.64	50.20	1.25	0.90	1.00	-0.06	0.37	3.95
GSM203329.CEL	N	R538P00541	87.86	0.29	55.17	1.35	0.99	0.99	-0.05	0.44	3.01
GSM203330.CEL	N	R539P00546	78.18	0.43	51.08	4.41	1.52	0.99	-0.04	0.40	4.50
GSM203331.CEL	N	R540P00550	102.04	0.32	52.91	1.01	0.91	0.99	-0.05	0.31	2.00
GSM203332.CEL	N	R541P00728	106.77	0.33	50.76	1.06	0.84	0.99	-0.01	0.27	2.15
GSM203333.CEL	T	R561P00761	76.78	0.47	48.68	1.31	0.98	0.99	0.01	0.32	1.75
GSM203334.CEL	T	R562P00726	83.19	0.60	48.26	1.05	0.83	0.99	0.00	0.32	1.62
GSM203335.CEL	N	R563P00723	83.97	0.40	51.99	0.96	0.80	0.98	-0.03	0.32	1.69
GSM203338.CEL	T	R566P00154	63.46	0.53	50.52	1.39	0.96	0.99	-0.06	0.44	2.35
GSM203340.CEL	N	R568P00766	62.46	0.65	48.75	0.95	0.83	0.99	0.00	0.35	1.86
GSM203341.CEL	T	R569P00764	120.75	0.33	48.01	1.27	0.97	0.98	-0.02	0.31	2.01
GSM203342.CEL	N	R570P00762	72.01	0.64	47.51	1.39	0.95	0.98	0.01	0.26	3.11
GSM203344.CEL	N	R582P01062	93.01	0.38	48.37	1.65	1.08	0.98	-0.01	0.29	3.10
GSM203345.CEL	N	R583P01063	81.97	0.31	52.52	1.54	1.03	0.98	-0.04	0.33	2.95
GSM203346.CEL	N	R584P01064	81.00	0.52	48.65	1.18	0.89	0.99	-0.00	0.28	2.39
GSM203347.CEL	T	R585P01065	93.46	0.42	44.75	1.31	0.98	0.99	0.05	0.35	1.78
GSM203348.CEL	N	R586P01066	82.45	0.36	51.54	1.27	0.94	0.99	-0.03	0.27	2.51
GSM203349.CEL	N	R587P01067	85.03	0.40	52.42	1.56	1.03	0.98	-0.06	0.32	3.04
GSM203350.CEL	N	R588P01069	95.32	0.51	45.92	1.82	1.15	0.99	0.03	0.30	2.65
GSM203351.CEL	N	R589P01070	83.34	0.37	46.82	1.62	1.27	1.00	-0.03	0.26	2.72
GSM203352.CEL	N	R590P01071	74.34	0.42	49.06	1.59	1.16	0.99	-0.01	0.29	2.58
GSM203353.CEL	N	R591P01072	73.62	0.53	45.81	1.34	0.97	0.99	0.01	0.34	2.04
GSM203354.CEL	N	R592P01081	73.47	0.41	50.23	1.09	0.91	0.98	-0.01	0.30	2.20
GSM203355.CEL	N	R601P01083	77.65	0.29	52.17	1.07	0.96	0.99	-0.06	0.39	2.16
GSM203356.CEL	N	R621P01206	60.86	0.97	47.29	1.93	0.98	1.00	-0.01	0.38	2.43
GSM203357.CEL	N	R622P01005	63.26	1.01	45.34	1.14	0.86	1.00	0.03	0.35	1.31
GSM203358.CEL	N	R623P01188	64.18	0.97	46.55	1.62	0.99	1.00	0.01	0.35	2.23
GSM203359.CEL	N	R624P00744	61.27	1.27	41.46	1.16	0.85	1.01	0.06	0.42	1.61
GSM203361.CEL	N	R626P01184	68.43	1.23	42.01	1.30	0.86	1.01	0.06	0.38	1.36
GSM203362.CEL	N	R641P00801	63.77	0.49	48.91	3.76	1.80	1.00	-0.06	0.49	3.94
GSM203363.CEL	N	R642P00802	70.13	0.36	53.18	3.15	1.47	0.99	-0.08	0.45	4.40
GSM203364.CEL	N	R643P00803	65.30	0.43	51.40	1.26	0.97	0.98	-0.06	0.31	3.13
GSM203365.CEL	N	R644P00804	76.45	0.38	53.79	2.78	1.27	0.99	-0.08	0.55	3.80
GSM203366.CEL	N	R645P00805	69.83	0.39	50.62	1.30	0.96	0.99	-0.05	0.34	2.85
GSM203367.CEL	N	R646P00806	75.25	0.33	55.36	1.23	0.93	0.99	-0.11	0.49	2.74
GSM203368.CEL	N	R647P01068	67.69	0.44	49.92	1.26	0.90	0.98	-0.01	0.23	1.95
GSM203370.CEL	N	R649P01087	76.26	0.42	48.28	1.67	1.13	0.98	-0.01	0.26	2.76
GSM203371.CEL	N	R650P01104	62.86	0.42	54.00	1.12	0.87	0.99	-0.10	0.46	2.69
GSM203372.CEL	N	R651P01105	58.76	0.83	41.54	1.31	1.02	0.99	0.05	0.36	3.13
GSM203373.CEL	N	R652P01186	77.56	0.51	48.34	1.20	0.99	0.99	0.00	0.30	2.63
GSM203374.CEL	T	R653P01205	72.91	0.67	43.54	2.41	1.15	0.99	0.03	0.30	2.89
GSM203375.CEL	N	R661P00807	60.14	1.83	36.32	1.23	0.76	1.02	0.10	0.51	1.81
GSM203376.CEL	T	R662P00808	57.13	1.47	36.32	1.47	0.91	1.02	0.12	0.54	1.20
GSM203377.CEL	N	R663P00904	57.58	2.23	34.25	0.91	0.73	1.06	0.10	0.64	0.77
GSM203378.CEL	N	R664P01207	60.85	1.88	32.07	2.30	1.12	1.03	0.15	0.63	1.90
GSM203379.CEL	N	R668P01211	61.32	1.87	33.50	2.94	1.21	1.02	0.10	0.54	2.27
GSM203380.CEL	N	R681P00686	151.77	0.34	44.15	1.29	0.92	1.00	0.03	0.34	1.92
GSM203381.CEL	N	R682P00687	100.03	0.36	47.10	1.41	1.04	0.99	-0.05	0.42	2.11
GSM203383.CEL	T	R684P01106	77.72	0.51	44.24	3.30	1.49	0.99	0.02	0.33	2.93
GSM203386.CEL	N	R701P01101	78.16	0.54	47.90	1.74	1.18	0.99	0.02	0.23	2.53
GSM203387.CEL	N	R702P01103	58.75	0.62	46.08	1.61	0.89	0.99	0.03	0.30	2.48
GSM203396.CEL	T	R723P00881	89.98	0.42	49.08	1.25	0.92	0.99	-0.01	0.32	1.55
GSM203398.CEL	T	R725P00941	88.25	0.41	50.48	1.27	1.09	0.99	-0.04	0.34	2.67
GSM203400.CEL	T	R727P01204	80.61	0.48	50.30	2.42	1.20	0.99	-0.02	0.28	2.38
GSM799468_CL2003022549AA_215.CEL	T	Prostate_cancer_sample_1	97.20	1.09	38.12	23.50	4.81	1.02	0.06	0.42	4.77
GSM799469_CL2003022550AA_223.CEL	T	Prostate_cancer_sample_2	62.85	1.10	41.26	22.42	3.74	1.02	0.02	0.39	4.44
GSM799470_CL2003022558AA_358.CEL	T	Prostate_cancer_sample_3	109.86	0.75	41.34	20.90	4.23	1.01	0.01	0.38	4.74
GSM799471_CL2003022559AA_361.CEL	T	Prostate_cancer_sample_4	98.76	0.66	42.98	21.08	4.22	1.00	0.00	0.37	4.86
GSM799472_CL2003022560AA_368.CEL	T	Prostate_cancer_sample_5	89.64	1.19	39.20	25.31	5.08	1.02	0.03	0.42	4.41
GSM799473_CL2003022561AA_371.CEL	T	Prostate_cancer_sample_6	95.20	0.83	40.25	25.82	4.53	1.02	0.03	0.41	4.46
GSM799474_CL2003022551AA_224A.CEL	T	Prostate_cancer_sample_7	105.06	1.23	35.59	20.61	4.57	1.04	0.07	0.49	3.50
GSM799475_CL2003022552AA_224B.CEL	T	Prostate_cancer_sample_8	108.41	1.35	35.47	18.23	3.51	1.06	0.07	0.53	3.40
GSM799476_CL2003022553AA_228A.CEL	T	Prostate_cancer_sample_9	84.67	1.27	38.48	23.33	3.67	1.04	0.06	0.49	3.86
GSM799477_CL2003022554AA_228B.CEL	T	Prostate_cancer_sample_10	69.98	2.84	32.39	24.48	4.84	1.07	0.09	0.54	3.46
GSM799478_CL2003022555AA_319A.CEL	T	Prostate_cancer_sample_11	70.17	4.32	27.95	34.83	7.33	1.11	0.09	0.74	3.95
GSM799479_CL2003022562AA_418A.CEL	T	Prostate_cancer_sample_12	102.56	0.78	40.51	22.13	4.56	1.03	0.01	0.42	5.14
GSM799480_CL2003022563AA_418B.CEL	T	Prostate_cancer_sample_13	80.27	1.24	40.97	20.86	4.31	1.03	0.04	0.43	4.93
GSM799481_CL2003022564AA_419A.CEL	T	Prostate_cancer_sample_14	84.66	0.94	40.79	15.30	3.98	1.02	0.01	0.39	5.09
GSM799482_CL2003022565AA_419B.CEL	T	Prostate_cancer_sample_15	93.56	0.70	43.37	14.55	3.13	1.01	0.00	0.37	4.81
GSM799483_CL2003110501AA_580A.CEL	T	Prostate_cancer_sample_16	85.57	3.30	29.10	7.98	3.13	1.07	0.10	0.54	3.53
GSM799484_CL2003110502AA_580B.CEL	T	Prostate_cancer_sample_17	77.52	2.83	32.54	12.30	4.59	1.08	0.10	0.54	4.03
GSM799485_CL2003110507AA_553A.CEL	T	Prostate_cancer_sample_18	56.72	3.13	32.58	17.02	5.21	1.06	0.07	0.50	4.34
GSM799486_CL2003110508AA_553B.CEL	T	Prostate_cancer_sample_19	63.20	4.64	30.17	14.95	3.85	1.08	0.07	0.55	4.08
GSM799487_CL20040123316AA_316.CEL	T	Prostate_cancer_sample_20	64.55	1.94	36.05	18.64	4.40	1.03	0.06	0.39	5.25
GSM799488_CL20040123317AA_317R.CEL	T	Prostate_cancer_sample_21	68.58	1.01	43.49	15.38	3.59	1.01	-0.00	0.43	5.13
GSM799489_CL20040123326AA_326.CEL	T	Prostate_cancer_sample_22	68.26	1.38	37.72	12.43	3.56	1.01	0.06	0.40	4.86
GSM799490_CL2004012114AA.CEL	M	Prostate_cancer_sample_23	75.84	0.85	40.81	1.31	1.00	1.01	0.10	0.47	1.03
GSM799491_CL2004012124AA.CEL	M	Prostate_cancer_sample_24	61.62	2.06	35.70	283.00	80.18	1.05	0.07	0.52	6.55
GSM799492_CL2004012125AA.CEL	M	Prostate_cancer_sample_25	49.64	2.48	30.05	11.57	4.66	1.06	0.14	0.66	3.59
GSM799493_CL2004012127AA.CEL	M	Prostate_cancer_sample_26	55.68	1.40	39.09	7.03	2.49	1.02	0.04	0.48	3.97
GSM799494_CL2004012128AA.CEL	M	Prostate_cancer_sample_27	51.16	0.91	50.91	9.58	3.34	1.02	-0.04	0.55	4.28
GSM799495_CL2004012131AA.CEL	M	Prostate_cancer_sample_28	47.99	3.06	34.63	43.96	8.78	1.06	0.10	0.56	5.15
GSM799496_CL2004012136AA.CEL	M	Prostate_cancer_sample_29	51.12	0.95	48.63	20.37	3.89	1.02	-0.03	0.55	4.72
GSM799497_CL2004012139AA.CEL	M	Prostate_cancer_sample_30	49.99	0.89	46.34	24.62	7.61	1.02	-0.02	0.53	4.52
GSM799498_CL2004012145AA.CEL	M	Prostate_cancer_sample_31	63.66	1.27	39.58	211.16	63.76	1.04	0.01	0.52	6.14
GSM799499_CL2004012149AA.CEL	M	Prostate_cancer_sample_32	64.47	1.10	42.47	9.32	2.98	1.02	0.01	0.49	4.30
GSM799500_CL2004012150AA.CEL	M	Prostate_cancer_sample_33	68.09	1.66	40.14	11.94	3.23	1.03	0.04	0.45	4.71
GSM799501_CL2004012151AA.CEL	M	Prostate_cancer_sample_34	50.60	1.19	43.97	172.89	11.62	1.03	-0.02	0.55	5.66
GSM799502_CL2004012152AA.CEL	M	Prostate_cancer_sample_35	63.01	1.04	39.47	63.18	15.09	1.04	0.05	0.55	5.56
GSM799503_CL2004012153AA.CEL	M	Prostate_cancer_sample_36	53.24	1.44	38.12	30.20	6.88	1.05	0.06	0.53	4.85
GSM799504_CL2004012154AA.CEL	M	Prostate_cancer_sample_37	51.35	1.45	37.56	14.48	4.72	1.03	0.09	0.52	4.55
GSM799505_CL2004012155AA.CEL	M	Prostate_cancer_sample_38	62.95	0.60	45.57	8.66	2.77	1.01	-0.03	0.55	4.56
GSM799506_CL2004012157AA.CEL	M	Prostate_cancer_sample_39	54.02	0.87	46.19	11.65	3.83	1.01	-0.05	0.52	4.65
GSM799507_CL2004012160AA.CEL	M	Prostate_cancer_sample_40	57.13	0.93	45.73	11.58	3.73	1.02	-0.01	0.49	4.78
GSM799508_CL2004012164AA.CEL	M	Prostate_cancer_sample_41	70.82	1.32	34.23	9.89	4.25	1.04	0.09	0.56	3.99
GSM799509_CL2004012366AA.CEL	M	Prostate_cancer_sample_42	92.88	1.14	39.18	50.41	7.84	1.04	0.03	0.50	5.37
GSM799510_CL2004012367AA.CEL	M	Prostate_cancer_sample_43	91.28	0.78	43.01	15.46	5.01	1.02	-0.01	0.49	4.94
GSM799511_CL2004012371AA.CEL	M	Prostate_cancer_sample_44	77.79	0.78	44.11	15.97	4.17	1.01	-0.00	0.44	4.99
GSM799512_CL2004012374AA.CEL	M	Prostate_cancer_sample_45	61.28	1.28	35.80	11.92	3.71	1.05	0.08	0.58	4.09
GSM799513_CL2004012379AA.CEL	M	Prostate_cancer_sample_46	86.70	2.48	27.75	52.17	15.52	1.08	0.14	0.77	3.90
GSM799514_CL20040123108AA.CEL	M	Prostate_cancer_sample_47	88.02	1.64	32.85	23.99	6.88	1.05	0.11	0.59	4.65
GSM799515_CL20040123117AA.CEL	M	Prostate_cancer_sample_48	82.21	2.16	24.31	26.33	8.13	1.07	0.20	0.89	3.93
GSM799516_CL20040123118AA.CEL	M	Prostate_cancer_sample_49	59.86	0.98	43.40	18.16	4.29	1.02	0.03	0.46	4.89
GSM799517_CL20040123122AA.CEL	M	Prostate_cancer_sample_50	59.59	2.63	27.74	42.59	15.16	1.07	0.17	0.82	4.19
GSM799518_CL20040123125AA.CEL	M	Prostate_cancer_sample_51	78.97	1.30	37.07	46.20	11.42	1.04	0.08	0.55	5.17

ArrayQualityMatrix Report

Tumour Purity ESTIMATE Report

Histogram:

Sample	Stromal score	Immune score	ESTIMATE score	Tumour purity
Summary Report
R421P00048	-77.8746416	288.6881888	210.8135472	0.8045184
R422P00092	336.9770737	475.4429335	812.4200072	0.7490025
R423P00094	693.4132098	1469.9074999	2163.3207097	0.6037993
R424P00100	-164.0370043	238.5714192	74.5344149	0.8162377
R425P00102	-520.2408288	-42.0287114	-562.2695401	0.8665979
R426P00145	898.2510978	1125.2309061	2023.4820039	0.6200335
R427P00146	-161.1520138	13.4069345	-147.7450793	0.8346497
R428P00155	693.4526074	917.8102378	1611.2628452	0.6663437
R429P00163	731.3288481	584.7982145	1316.1270627	0.6980116
R430P00182	144.093465	83.020331	227.113796	0.803095
R431P00183	1260.020899	947.183225	2207.204125	0.598652
R432P00185	-0.1614353	208.4560222	208.2945869	0.8047379
R433P00224	-59.5127090	-66.2920863	-125.8047953	0.8328715
R434P00230	-173.0604376	435.2159088	262.1554712	0.8000195
R436P00056	485.7830955	895.6974716	1381.4805671	0.6911101
R437P00057	-5.704927	856.269030	850.564103	0.745281
R438P00060	177.1488110	998.1161678	1175.2649788	0.7126678
R439P00089	459.6169386	793.2121680	1252.8291066	0.7046348
R440P00121	412.2841293	686.9382987	1099.2224280	0.7204535
R441P00225	-63.9721304	35.4452901	-28.5268403	0.8248838
R456P00301	797.3510650	958.2676036	1755.6186686	0.6503953
R457P00303	-22.2514894	665.1609690	642.9094797	0.7652551
R458P00307	474.982954	101.139490	576.122443	0.771529
R459P00309	444.8811072	528.0152829	972.8963901	0.7331887
R461P00322	641.6237972	235.9218215	877.5456188	0.7426344
R462P00324	57.2244944	370.8400264	428.0645209	0.7851722
R463P00344	635.50628	511.31975	1146.82603	0.71559
R464P00422	85.0610175	271.0931162	356.1541338	0.7916652
R465P00426	536.015183	571.262779	1107.277962	0.719633
R466P00431	-361.7853159	149.3055825	-212.4797334	0.8398456
R468P00438	-482.0480101	-34.6609024	-516.7089125	0.8632413
R469P00501	236.1673220	367.6986511	603.8659731	0.7689318
R481P00302	277.2092668	748.4819238	1025.6911905	0.7278967
R482P00304	180.8459408	1081.6314716	1262.4774124	0.7036292
R484P00306	1.7255004	231.1896902	232.9151905	0.8025873
R487P00311	545.1438718	300.0905119	845.2343837	0.7458024
R488P00312	214.9260001	101.2460391	316.1720391	0.7952372
R489P00323	597.8607760	337.1624873	935.0232634	0.7369578
R491P00345	842.1241208	1225.3569633	2067.4810841	0.6149534
R493P00433	-128.3037744	167.7534069	39.4496324	0.8192021
R494P00442	-352.8641134	-38.2445757	-391.1086892	0.8537885
R521P00428	-325.1043555	157.5865597	-167.5177958	0.8362447
R523P00585	-412.6171832	158.6320893	-253.9850940	0.8431371
R524P00603	-46.3404031	933.6925566	887.3521535	0.7416697
R525P00604	260.7343559	1206.7085802	1467.4429362	0.6819354
R527P00606	-130.2969261	-107.7213361	-238.0182623	0.8418746
R528P00607	327.7089938	308.0261026	635.7350964	0.7659326
R529P00609	7.7179107	257.9934690	265.7113797	0.7997062
R532P00648	42.0605540	101.5874592	143.6480132	0.8103348
R533P00403	-362.3364156	337.8448096	-24.4916061	0.8245488
R534P00429	269.4765458	691.4788804	960.9554262	0.7343795
R536P00445	78.0909446	-18.1010139	59.9899306	0.8174692
R537P00446	401.128548	189.485293	590.613842	0.770174
R538P00541	35.8386395	410.6211939	446.4598333	0.7834972
R539P00546	-62.4866710	-69.4620174	-131.9486884	0.8333703
R540P00550	577.3249877	827.7904595	1405.1154472	0.6885984
R541P00728	56.8527976	271.3923571	328.2451547	0.7941615
R561P00761	-605.9732592	-79.2060491	-685.1793083	0.8754594
R562P00726	278.6934108	570.0915179	848.7849287	0.7454551
R563P00723	571.7509342	680.3225702	1252.0735044	0.7047135
R566P00154	-850.1545416	-335.2393359	-1185.3938774	0.9085546
R568P00766	619.770343	611.603681	1231.374025	0.706866
R569P00764	-101.0534998	61.8971949	-39.1563049	0.8257648
R570P00762	94.3101359	494.2023768	588.5125128	0.7703707
R582P01062	261.8478390	1100.4154534	1362.2632924	0.6931461
R583P01063	402.4740522	407.1786506	809.6527028	0.7492716
R584P01064	559.1676281	396.8157388	955.9833669	0.7348747
R585P01065	-241.8742179	41.8579670	-200.0162509	0.8388511
R586P01066	688.2410244	799.6890836	1487.9301080	0.6797328
R587P01067	645.6985719	457.9607117	1103.6592836	0.7200017
R588P01069	468.4614528	622.8940509	1091.3555037	0.7212539
R589P01070	475.8712451	795.2682721	1271.1395173	0.7027251
R590P01071	609.7813704	448.7847002	1058.5660705	0.7245794
R591P01072	652.5625924	779.2661064	1431.8286988	0.6857497
R592P01081	409.8989919	338.0600804	747.9590723	0.7552382
R601P01083	1500.6006753	1086.0232710	2586.6239462	0.5531351
R621P01206	480.4797310	1526.4282067	2006.9079377	0.6219405
R622P01005	175.2928036	216.5165035	391.8093072	0.7884568
R623P01188	743.2976454	520.4953223	1263.7929678	0.7034919
R624P00744	802.3480771	313.2037084	1115.5517855	0.7187891
R626P01184	331.4123280	355.7722776	687.1846057	0.7610553
R641P00801	651.3002768	1068.5251346	1719.8254113	0.6543772
R642P00802	772.9535267	850.8288539	1623.7823806	0.6649723
R643P00803	915.1252449	1490.1333351	2405.2585800	0.5751153
R644P00804	437.504257	505.342976	942.847233	0.736181
R645P00805	681.6459536	879.9405344	1561.5864880	0.6717631
R646P00806	791.5606705	1055.3267833	1846.8874538	0.6401607
R647P01068	147.0797675	529.4121886	676.4919561	0.7620725
R649P01087	388.0160553	613.8419537	1001.8580091	0.7302911
R650P01104	880.0813601	741.1120768	1621.1934369	0.6652561
R651P01105	199.6669595	292.8325268	492.4994863	0.7792799
R652P01186	694.7404053	784.8739397	1479.6143450	0.6806276
R653P01205	71.0103872	41.5504355	112.5608227	0.8130003
R661P00807	624.4482738	712.9197936	1337.3680675	0.6957755
R662P00808	-381.7582101	23.1351192	-358.6230909	0.8512962
R663P00904	582.8835006	504.0415074	1086.9250080	0.7217042
R664P01207	407.4842531	567.4099066	974.8941597	0.7329892
R668P01211	195.8567332	341.3508232	537.2075564	0.7751505
R681P00686	-96.4082752	665.0477078	568.6394326	0.7722274
R682P00687	-216.8754419	208.1576377	-8.7178041	0.8232365
R684P01106	-78.7056467	714.5710887	635.8654420	0.7659203
R701P01101	339.5340686	608.2382603	947.7723289	0.7356916
R702P01103	760.584246	1160.331343	1920.915589	0.631775
R723P00881	-358.1450055	321.6032490	-36.5417565	0.8255483
R725P00941	132.7385809	130.3865712	263.1251521	0.7999341
R727P01204	124.5703460	180.4819781	305.0523241	0.7962258
Prostate_cancer_sample_1	-968.2161683	-618.9801298	-1587.1962982	0.9316004
Prostate_cancer_sample_2	-843.9831621	-358.7749194	-1202.7580814	0.9096165
Prostate_cancer_sample_3	-120.9926081	-108.6408505	-229.6334586	0.8412097
Prostate_cancer_sample_4	-365.5863863	-171.3269394	-536.9133257	0.8647346
Prostate_cancer_sample_5	-414.6279937	-177.9411528	-592.5691465	0.8688088
Prostate_cancer_sample_6	-875.6589050	-121.2096050	-996.8685100	0.8966473
Prostate_cancer_sample_7	-114.0409014	-85.1966874	-199.2375888	0.8387889
Prostate_cancer_sample_8	-23.0752870	1.3108974	-21.7643896	0.8243222
Prostate_cancer_sample_9	-1162.4617550	-437.1580911	-1599.6198460	0.9322617
Prostate_cancer_sample_10	-1220.5951532	-406.6740403	-1627.2691935	0.9337223
Prostate_cancer_sample_11	-346.7449103	835.5380022	488.7930919	0.7796207
Prostate_cancer_sample_12	-1038.8802531	-155.3743344	-1194.2545875	0.9090972
Prostate_cancer_sample_13	-684.7220042	20.3037711	-664.4182330	0.8739825
Prostate_cancer_sample_14	-715.1176221	-322.0918953	-1037.2095174	0.8992533
Prostate_cancer_sample_15	-739.8390254	-277.5192491	-1017.3582746	0.8979748
Prostate_cancer_sample_16	-1179.394404	-558.513335	-1737.907739	0.939413
Prostate_cancer_sample_17	-1253.7951797	-633.4338288	-1887.2290086	0.9467002
Prostate_cancer_sample_18	-863.1907098	-251.9215837	-1115.1122935	0.9041965
Prostate_cancer_sample_19	-719.6239044	-21.4714955	-741.0953999	0.8793966
Prostate_cancer_sample_20	-331.3754618	903.8661556	572.4906938	0.7718681
Prostate_cancer_sample_21	-903.8503429	-457.3610490	-1361.2113919	0.9190326
Prostate_cancer_sample_22	-644.870010	-371.979454	-1016.849464	0.897942
Prostate_cancer_sample_23	-1736.0361141	-944.0986813	-2680.1347954	0.9777015
Prostate_cancer_sample_24	166.7857280	-65.9491790	100.8365490	0.8140011
Prostate_cancer_sample_25	-512.9184171	357.0799289	-155.8384882	0.8353034
Prostate_cancer_sample_26	-298.4352380	43.2158929	-255.2193451	0.8432345
Prostate_cancer_sample_27	389.6590164	242.9087558	632.5677722	0.7662314
Prostate_cancer_sample_28	-818.4564028	-192.0809407	-1010.5373435	0.8975338
Prostate_cancer_sample_29	-853.3499833	-461.6459267	-1314.9959100	0.9163374
Prostate_cancer_sample_30	-594.2834462	-474.4439966	-1068.7274428	0.9012674
Prostate_cancer_sample_31	579.4000458	289.5301547	868.9302004	0.7434808
Prostate_cancer_sample_32	-546.845405	-210.734214	-757.579619	0.880546
Prostate_cancer_sample_33	35.8710022	52.7220019	88.5930041	0.8150437
Prostate_cancer_sample_34	-94.6092583	168.0655871	73.4563288	0.8163291
Prostate_cancer_sample_35	-888.3594588	-617.1927140	-1505.5521728	0.9271774
Prostate_cancer_sample_36	761.7829088	315.3771287	1077.1600375	0.7226956
Prostate_cancer_sample_37	-726.3619959	-434.7705204	-1161.1325163	0.9070611
Prostate_cancer_sample_38	-1135.9487454	-796.1541008	-1932.1028462	0.9488014
Prostate_cancer_sample_39	-387.4588763	-239.6237057	-627.0825819	0.8713061
Prostate_cancer_sample_40	-178.159436	464.076898	285.917462	0.797922
Prostate_cancer_sample_41	-675.0580989	-413.0439422	-1088.1020411	0.9024959
Prostate_cancer_sample_42	401.3053908	598.4921727	999.7975635	0.7304977
Prostate_cancer_sample_43	419.120365	309.403090	728.523454	0.757105
Prostate_cancer_sample_44	-119.3984239	52.1397061	-67.2587178	0.8280844
Prostate_cancer_sample_45	-714.6762088	502.0866280	-212.5895807	0.8398543
Prostate_cancer_sample_46	681.8448149	1305.4720594	1987.3168743	0.6241898
Prostate_cancer_sample_47	478.8782984	166.2773096	645.1556080	0.7650428
Prostate_cancer_sample_48	-177.168753	812.539385	635.370632	0.765967
Prostate_cancer_sample_49	340.6906854	831.5448750	1172.2355604	0.7129797
Prostate_cancer_sample_50	-6.0602323	165.6404624	159.5802301	0.8089622
Prostate_cancer_sample_51	-593.2887828	-48.8445141	-642.1332968	0.8723882

Cluster Diagram

Differential Expression

All data:
Analysis:	Differential Expression method: LIMMA separate Adjustment method: BH

M vs T

Summary:	Up: 862 Down: 907 p-value: 0.05 log fold-change: 1
Distribution of p-value:
Heatmap:

Probeset ID	Locus	Gene	Description	LogFC	adj p-value
202274_at	2p13.1	ACTG2	actin, gamma 2, smooth muscle, enteric	-6.900	1.571e-57
203549_s_at	8p22	LPL	lipoprotein lipase	4.161	1.434e-50
206364_at	1q32.1	KIF14	kinesin family member 14	2.437	2.294e-51
213909_at	3q29	LRRC15	leucine rich repeat containing 15	4.125	2.222e-48
215123_at	16p12.2	NPIPL3	nuclear pore complex interacting protein-like 3	4.156	2.173e-42
215191_at	NA	NA	NA	2.882	5.308e-53
215206_at	NA	NA	NA	2.146	7.343e-44
215599_at	NA	NA	NA	4.508	2.641e-52
220338_at	1q25.2	RALGPS2	Ral GEF with PH domain and SH3 binding motif 2	1.625	8.081e-42
37892_at	1p21	COL11A1	collagen, type XI, alpha 1	6.062	3.920e-54

T vs N

Summary:	Up: 626 Down: 987 p-value: 0.05 log fold-change: 1
Distribution of p-value:
Heatmap:

Probeset ID	Locus	Gene	Description	LogFC	adj p-value
204934_s_at	19q11-q13.2	HPN	hepsin	3.598	1.026e-35
209356_x_at	11q13.1	EFEMP2	EGF containing fibulin-like extracellular matrix protein 2	-2.055	2.517e-29
209424_s_at	NA	NA	NA	5.439	2.545e-29
209425_at	5p13	AMACR	alpha-methylacyl-CoA racemase	5.281	8.827e-32
209426_s_at	NA	NA	NA	6.094	1.571e-32
209948_at	5q34	KCNMB1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	-3.125	3.064e-29
211276_at	Xq22.1-q22.3	TCEAL2	transcription elongation factor A (SII)-like 2	-3.760	1.297e-36
214027_x_at	NA	NA	NA	-2.625	2.606e-30
219685_at	Xq22.1	TMEM35	transmembrane protein 35	-3.197	3.661e-37
222121_at	3q25.2	ARHGEF26	Rho guanine nucleotide exchange factor (GEF) 26	3.269	2.033e-34

VENN diagram

Gene Ontology

M vs T

MF test: Under-representation

Gene to GO MF test for under representation
GOMFID	Pvalue	OddsRatio	ExpCount	Count	Size	Term
GO:0004930	0.000	0.267	82.062	27	366	G-protein coupled receptor activity
GO:0004888	0.000	0.469	157.846	87	704	transmembrane signaling receptor activity
GO:0038023	0.000	0.503	177.129	104	790	signaling receptor activity
GO:0004872	0.000	0.573	215.918	142	963	receptor activity
GO:0022838	0.000	0.361	67.488	29	301	substrate-specific channel activity
GO:0005216	0.000	0.358	65.695	28	293	ion channel activity
GO:0015267	0.000	0.380	71.076	32	317	channel activity
GO:0022803	0.000	0.380	71.076	32	317	passive transmembrane transporter activity
GO:0022836	0.000	0.335	52.466	21	234	gated channel activity
GO:0005261	0.000	0.371	47.982	21	214	cation channel activity
GO:0004871	0.000	0.684	235.200	178	1049	signal transducer activity
GO:0060089	0.000	0.684	235.200	178	1049	molecular transducer activity
GO:0004896	0.000	0.139	17.264	3	77	cytokine receptor activity
GO:0008528	0.000	0.219	22.421	6	100	G-protein coupled peptide receptor activity
GO:0015075	0.000	0.605	122.645	83	547	ion transmembrane transporter activity
GO:0005125	0.000	0.365	37.219	16	166	cytokine activity
GO:0046873	0.000	0.504	64.349	37	287	metal ion transmembrane transporter activity
GO:0001653	0.000	0.255	22.646	7	101	peptide receptor activity
GO:0015276	0.000	0.297	25.336	9	113	ligand-gated ion channel activity
GO:0022834	0.000	0.297	25.336	9	113	ligand-gated channel activity
GO:0005230	0.000	0.119	13.453	2	60	extracellular ligand-gated ion channel activity
GO:0005244	0.000	0.343	29.596	12	132	voltage-gated ion channel activity
GO:0022832	0.000	0.343	29.596	12	132	voltage-gated channel activity
GO:0004984	0.000	0.000	8.744	0	39	olfactory receptor activity
GO:0022891	0.000	0.666	143.272	105	639	substrate-specific transmembrane transporter activity
GO:0005179	0.000	0.254	19.507	6	87	hormone activity
GO:0022892	0.000	0.700	168.609	129	752	substrate-specific transporter activity
GO:0022843	0.000	0.322	23.542	9	105	voltage-gated cation channel activity
GO:0022857	0.000	0.696	156.501	119	698	transmembrane transporter activity
GO:0005249	0.000	0.181	13.453	3	60	voltage-gated potassium channel activity
GO:0030594	0.000	0.184	13.229	3	59	neurotransmitter receptor activity
GO:0022890	0.000	0.610	79.820	54	356	inorganic cation transmembrane transporter activity
GO:0008227	0.000	0.086	9.193	1	41	G-protein coupled amine receptor activity
GO:0008324	0.000	0.643	94.618	67	422	cation transmembrane transporter activity
GO:0015079	0.001	0.351	21.749	9	97	potassium ion transmembrane transporter activity
GO:0005267	0.001	0.317	18.610	7	83	potassium channel activity
GO:0005231	0.002	0.168	9.641	2	43	excitatory extracellular ligand-gated ion channel activity
GO:0015077	0.002	0.604	55.381	37	247	monovalent inorganic cation transmembrane transporter activity
GO:0008509	0.002	0.458	26.681	14	119	anion transmembrane transporter activity
GO:0008188	0.004	0.115	6.951	1	31	neuropeptide receptor activity
GO:0005126	0.005	0.587	41.480	27	185	cytokine receptor binding

MF test: Over-representation

Gene to GO MF test for over representation
GOMFID	Pvalue	OddsRatio	ExpCount	Count	Size	Term
GO:0005515	0.000	1.575	1301.784	1508	5806	protein binding
GO:0019899	0.000	1.533	198.877	265	887	enzyme binding
GO:0005488	0.000	1.378	1972.407	2055	8797	binding
GO:0003824	0.000	1.241	897.527	993	4003	catalytic activity
GO:0042802	0.000	1.476	149.775	196	668	identical protein binding
GO:0004860	0.000	4.063	8.744	21	39	protein kinase inhibitor activity
GO:0000166	0.000	1.277	415.916	484	1855	nucleotide binding
GO:1901265	0.000	1.276	416.140	484	1856	nucleoside phosphate binding
GO:0097159	0.000	1.275	416.365	484	1857	organic cyclic compound binding
GO:0003713	0.000	1.801	52.242	79	233	transcription coactivator activity
GO:0000988	0.000	1.564	94.170	129	420	protein binding transcription factor activity
GO:0019900	0.000	1.643	73.990	105	330	kinase binding
GO:0000989	0.000	1.563	91.255	125	407	transcription factor binding transcription factor activity
GO:0019210	0.000	3.656	9.193	21	41	kinase inhibitor activity
GO:0003712	0.000	1.556	88.564	121	395	transcription cofactor activity
GO:0019887	0.000	2.417	19.731	36	88	protein kinase regulator activity
GO:0019901	0.000	1.653	66.591	95	297	protein kinase binding
GO:0004842	0.000	1.807	42.152	64	188	ubiquitin-protein ligase activity
GO:0016874	0.000	1.543	79.372	108	354	ligase activity
GO:0031625	0.000	2.009	28.251	46	126	ubiquitin protein ligase binding
GO:0044389	0.000	2.009	28.251	46	126	small conjugating protein ligase binding
GO:0005520	0.000	5.020	4.933	13	22	insulin-like growth factor binding
GO:0016879	0.000	1.658	55.157	79	246	ligase activity, forming carbon-nitrogen bonds
GO:0016881	0.000	1.703	48.654	71	217	acid-amino acid ligase activity
GO:0036094	0.000	1.219	449.997	508	2007	small molecule binding
GO:0000287	0.000	1.879	32.063	50	143	magnesium ion binding
GO:0003682	0.000	1.689	47.533	69	212	chromatin binding
GO:0019787	0.000	1.711	45.067	66	201	small conjugating protein ligase activity
GO:0019207	0.000	2.071	22.870	38	102	kinase regulator activity
GO:0048407	0.001	9.254	2.466	8	11	platelet-derived growth factor binding
GO:0016538	0.001	6.248	3.139	9	14	cyclin-dependent protein kinase regulator activity
GO:0003723	0.001	1.330	147.308	180	657	RNA binding
GO:0030291	0.001	4.959	3.812	10	17	protein serine/threonine kinase inhibitor activity
GO:0030374	0.001	3.090	7.623	16	34	ligand-dependent nuclear receptor transcription coactivator activity
GO:0043566	0.001	1.661	40.358	58	180	structure-specific DNA binding
GO:0046983	0.002	1.320	147.308	179	657	protein dimerization activity
GO:0003729	0.002	2.074	16.816	28	75	mRNA binding
GO:0033192	0.003	Inf	0.897	4	4	calmodulin-dependent protein phosphatase activity
GO:0051425	0.003	Inf	0.897	4	4	PTB domain binding
GO:0043531	0.003	3.819	4.708	11	21	ADP binding
GO:0019838	0.003	1.880	21.749	34	97	growth factor binding
GO:0042803	0.003	1.355	99.775	124	445	protein homodimerization activity
GO:0035639	0.004	1.197	320.850	361	1431	purine ribonucleoside triphosphate binding
GO:0032555	0.004	1.195	326.679	367	1457	purine ribonucleotide binding
GO:0017076	0.004	1.194	328.697	369	1466	purine nucleotide binding
GO:0019205	0.004	2.742	7.623	15	34	nucleobase-containing compound kinase activity
GO:0032553	0.004	1.193	326.903	367	1458	ribonucleotide binding

BP test: Under-representation

Gene to GO BP test for under representation
GOBPID	Pvalue	OddsRatio	ExpCount	Count	Size	Term
GO:0007186	0.000	0.511	117.247	69	514	G-protein coupled receptor signaling pathway
GO:0007267	0.000	0.665	205.752	152	902	cell-cell signaling
GO:0007268	0.000	0.594	119.984	80	526	synaptic transmission
GO:0019226	0.000	0.619	134.583	93	590	transmission of nerve impulse
GO:0035637	0.000	0.634	136.179	96	597	multicellular organismal signaling
GO:0050877	0.000	0.717	214.420	168	940	neurological system process
GO:0007586	0.000	0.324	20.758	8	91	digestion
GO:0009583	0.000	0.000	6.843	0	30	detection of light stimulus
GO:0007631	0.000	0.259	15.967	5	70	feeding behavior
GO:0007606	0.001	0.236	13.914	4	61	sensory perception of chemical stimulus
GO:0050907	0.001	0.000	6.387	0	28	detection of chemical stimulus involved in sensory perception
GO:0051606	0.001	0.442	29.426	15	129	detection of stimulus
GO:0007602	0.001	0.000	5.931	0	26	phototransduction
GO:0007600	0.001	0.650	81.206	58	356	sensory perception
GO:0030810	0.001	0.254	13.002	4	57	positive regulation of nucleotide biosynthetic process
GO:1900373	0.001	0.254	13.002	4	57	positive regulation of purine nucleotide biosynthetic process
GO:0030804	0.002	0.259	12.774	4	56	positive regulation of cyclic nucleotide biosynthetic process
GO:0072503	0.002	0.580	49.499	32	217	cellular divalent inorganic cation homeostasis
GO:0009593	0.002	0.264	12.546	4	55	detection of chemical stimulus
GO:0007187	0.002	0.492	30.338	17	133	G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger
GO:0051480	0.003	0.526	35.356	21	155	cytosolic calcium ion homeostasis
GO:0014072	0.003	0.000	5.246	0	23	response to isoquinoline alkaloid
GO:0043278	0.003	0.000	5.246	0	23	response to morphine
GO:0006874	0.003	0.587	47.446	31	208	cellular calcium ion homeostasis
GO:0072507	0.003	0.605	52.236	35	229	divalent inorganic cation homeostasis
GO:0045981	0.003	0.306	13.686	5	60	positive regulation of nucleotide metabolic process
GO:1900544	0.003	0.306	13.686	5	60	positive regulation of purine nucleotide metabolic process
GO:0007620	0.003	0.000	5.018	0	22	copulation
GO:0030808	0.004	0.404	19.161	9	84	regulation of nucleotide biosynthetic process
GO:1900371	0.004	0.404	19.161	9	84	regulation of purine nucleotide biosynthetic process
GO:0048483	0.004	0.187	8.668	2	38	autonomic nervous system development
GO:0030802	0.004	0.409	18.933	9	83	regulation of cyclic nucleotide biosynthetic process
GO:0042088	0.004	0.116	6.843	1	30	T-helper 1 type immune response
GO:0030801	0.004	0.318	13.230	5	58	positive regulation of cyclic nucleotide metabolic process
GO:0055074	0.005	0.617	49.955	34	219	calcium ion homeostasis
GO:0030816	0.005	0.287	11.633	4	51	positive regulation of cAMP metabolic process
GO:0030819	0.005	0.287	11.633	4	51	positive regulation of cAMP biosynthetic process
GO:0050906	0.005	0.287	11.633	4	51	detection of stimulus involved in sensory perception
GO:0007204	0.005	0.542	32.847	20	144	elevation of cytosolic calcium ion concentration

BP test: Over-representation

Gene to GO BP test for over representation
GOBPID	Pvalue	OddsRatio	ExpCount	Count	Size	Term
GO:0016043	0.000	1.404	726.975	865	3187	cellular component organization
GO:0071840	0.000	1.390	747.276	883	3276	cellular component organization or biogenesis
GO:0071842	0.000	1.394	586.005	705	2569	cellular component organization at cellular level
GO:0071841	0.000	1.378	605.850	723	2656	cellular component organization or biogenesis at cellular level
GO:0006996	0.000	1.451	372.269	469	1632	organelle organization
GO:0007049	0.000	1.509	254.567	333	1116	cell cycle
GO:0044237	0.000	1.302	1484.744	1601	6509	cellular metabolic process
GO:0044267	0.000	1.334	588.970	692	2582	cellular protein metabolic process
GO:0010605	0.000	1.481	240.880	312	1056	negative regulation of macromolecule metabolic process
GO:0051726	0.000	1.645	138.232	194	606	regulation of cell cycle
GO:0048523	0.000	1.336	519.626	615	2278	negative regulation of cellular process
GO:0008285	0.000	1.749	102.192	150	448	negative regulation of cell proliferation
GO:0008152	0.000	1.297	1623.889	1730	7119	metabolic process
GO:0009056	0.000	1.380	367.023	449	1609	catabolic process
GO:0031324	0.000	1.460	239.055	307	1048	negative regulation of cellular metabolic process
GO:0045786	0.000	1.795	87.593	131	384	negative regulation of cell cycle
GO:0030163	0.000	1.753	93.067	137	408	protein catabolic process
GO:0032269	0.000	1.832	76.416	116	335	negative regulation of cellular protein metabolic process
GO:0006464	0.000	1.330	454.844	540	1994	cellular protein modification process
GO:0036211	0.000	1.330	454.844	540	1994	protein modification process
GO:0046907	0.000	1.473	209.858	272	920	intracellular transport
GO:0044238	0.000	1.267	1503.449	1607	6591	primary metabolic process
GO:0009892	0.000	1.423	259.357	327	1137	negative regulation of metabolic process
GO:0031400	0.000	1.948	60.676	96	266	negative regulation of protein modification process
GO:0044419	0.000	1.766	85.084	126	373	interspecies interaction between organisms
GO:0043412	0.000	1.318	469.671	554	2059	macromolecule modification
GO:0048519	0.000	1.293	568.441	658	2492	negative regulation of biological process
GO:0009057	0.000	1.535	156.025	209	684	macromolecule catabolic process
GO:0019941	0.000	1.849	68.660	105	301	modification-dependent protein catabolic process
GO:0042127	0.000	1.439	220.351	281	966	regulation of cell proliferation
GO:0008283	0.000	1.383	289.923	358	1271	cell proliferation
GO:0044248	0.000	1.368	313.874	384	1376	cellular catabolic process
GO:0043632	0.000	1.830	69.116	105	303	modification-dependent macromolecule catabolic process
GO:0010563	0.000	2.136	41.059	69	180	negative regulation of phosphorus metabolic process
GO:0045936	0.000	2.136	41.059	69	180	negative regulation of phosphate metabolic process
GO:0070647	0.000	1.616	112.685	157	494	protein modification by small protein conjugation or removal
GO:0051248	0.000	1.722	85.084	124	373	negative regulation of protein metabolic process
GO:0051603	0.000	1.792	72.082	108	316	proteolysis involved in cellular protein catabolic process
GO:0032268	0.000	1.420	227.878	288	999	regulation of cellular protein metabolic process
GO:0001933	0.000	2.162	37.181	63	163	negative regulation of protein phosphorylation
GO:0033673	0.000	2.328	29.882	53	131	negative regulation of kinase activity
GO:0032446	0.000	1.620	100.139	140	439	protein modification by small protein conjugation
GO:0019538	0.000	1.250	690.706	778	3028	protein metabolic process
GO:0042326	0.000	2.078	39.919	66	175	negative regulation of phosphorylation
GO:0044257	0.000	1.733	74.363	109	326	cellular protein catabolic process
GO:0007010	0.000	1.504	143.479	190	629	cytoskeleton organization
GO:0051348	0.000	2.244	31.707	55	139	negative regulation of transferase activity
GO:0022402	0.000	1.430	192.294	245	843	cell cycle process
GO:0006469	0.000	2.345	28.057	50	123	negative regulation of protein kinase activity
GO:0016310	0.000	1.371	245.670	303	1077	phosphorylation
GO:0016265	0.000	1.322	327.561	392	1436	death
GO:0006511	0.000	1.748	67.063	99	294	ubiquitin-dependent protein catabolic process
GO:0007050	0.000	1.707	73.678	107	323	cell cycle arrest
GO:0008219	0.000	1.321	326.876	391	1433	cell death
GO:0016567	0.000	1.610	93.980	131	412	protein ubiquitination
GO:0006796	0.000	1.341	285.589	346	1252	phosphate-containing compound metabolic process
GO:0012501	0.000	1.334	296.766	358	1301	programmed cell death
GO:0006793	0.000	1.339	285.817	346	1253	phosphorus metabolic process
GO:0044260	0.000	1.213	1127.529	1218	4943	cellular macromolecule metabolic process
GO:0000902	0.000	1.438	166.061	213	728	cell morphogenesis
GO:0006915	0.000	1.329	294.029	354	1289	apoptotic process
GO:0048522	0.000	1.245	588.286	666	2579	positive regulation of cellular process
GO:0031399	0.000	1.409	186.819	236	819	regulation of protein modification process
GO:0051325	0.000	1.650	79.609	113	349	interphase
GO:0010498	0.000	1.944	42.884	68	188	proteasomal protein catabolic process
GO:0051028	0.000	2.485	21.670	40	95	mRNA transport
GO:0051329	0.000	1.656	78.012	111	342	interphase of mitotic cell cycle
GO:0051641	0.000	1.293	365.426	430	1602	cellular localization
GO:0000278	0.000	1.462	144.619	188	634	mitotic cell cycle
GO:0043161	0.000	1.951	41.515	66	182	proteasomal ubiquitin-dependent protein catabolic process
GO:0032989	0.000	1.415	175.870	223	771	cellular component morphogenesis
GO:0007044	0.000	3.175	12.774	27	56	cell-substrate junction assembly
GO:0043549	0.000	1.500	120.668	160	529	regulation of kinase activity
GO:0007346	0.000	1.738	59.764	88	262	regulation of mitotic cell cycle
GO:0031124	0.000	2.843	15.055	30	66	mRNA 3'-end processing
GO:0045859	0.000	1.502	115.194	153	505	regulation of protein kinase activity
GO:0006468	0.000	1.360	216.929	267	951	protein phosphorylation
GO:0048193	0.000	2.093	31.251	52	137	Golgi vesicle transport
GO:0051338	0.000	1.480	124.090	163	544	regulation of transferase activity
GO:0045930	0.000	4.042	7.984	19	35	negative regulation of mitotic cell cycle
GO:0055114	0.000	1.515	106.982	143	469	oxidation-reduction process
GO:0015931	0.000	2.121	29.198	49	128	nucleobase-containing compound transport
GO:0051253	0.000	1.430	147.585	189	647	negative regulation of RNA metabolic process
GO:0006913	0.000	1.673	64.782	93	284	nucleocytoplasmic transport
GO:0048518	0.000	1.219	641.891	716	2814	positive regulation of biological process
GO:0022403	0.000	1.414	155.112	197	680	cell cycle phase
GO:0051246	0.000	1.319	258.673	311	1134	regulation of protein metabolic process
GO:0048145	0.000	3.042	12.090	25	53	regulation of fibroblast proliferation
GO:0044092	0.000	1.451	128.880	167	565	negative regulation of molecular function
GO:0051169	0.000	1.656	65.238	93	286	nuclear transport
GO:0006403	0.000	2.136	26.688	45	117	RNA localization
GO:0051168	0.000	2.317	21.442	38	94	nuclear export
GO:0090398	0.000	5.289	5.246	14	23	cellular senescence
GO:0051649	0.000	1.278	326.876	383	1433	establishment of localization in cell
GO:0050657	0.000	2.160	25.320	43	111	nucleic acid transport
GO:0050658	0.000	2.160	25.320	43	111	RNA transport
GO:0051236	0.000	2.160	25.320	43	111	establishment of RNA localization
GO:0007265	0.000	1.776	47.446	71	208	Ras protein signal transduction
GO:0043086	0.000	1.506	98.998	132	434	negative regulation of catalytic activity
GO:0044265	0.000	1.438	127.283	164	558	cellular macromolecule catabolic process
GO:0000082	0.000	1.867	38.778	60	170	G1/S transition of mitotic cell cycle
GO:0051262	0.000	2.517	16.652	31	73	protein tetramerization
GO:0051128	0.000	1.324	220.807	267	968	regulation of cellular component organization
GO:0045892	0.000	1.405	142.110	180	623	negative regulation of transcription, DNA-dependent
GO:0048144	0.000	2.839	12.546	25	55	fibroblast proliferation
GO:0030030	0.000	1.373	164.693	205	722	cell projection organization
GO:0050790	0.000	1.290	272.815	323	1196	regulation of catalytic activity
GO:0006091	0.000	1.525	86.908	117	381	generation of precursor metabolites and energy
GO:0050684	0.000	3.855	7.299	17	32	regulation of mRNA processing
GO:0035556	0.000	1.267	324.367	378	1422	intracellular signal transduction
GO:0010629	0.000	1.374	158.078	197	693	negative regulation of gene expression
GO:0033036	0.000	1.259	333.491	387	1462	macromolecule localization
GO:0001932	0.000	1.383	150.094	188	658	regulation of protein phosphorylation
GO:0006397	0.000	1.563	73.678	101	323	mRNA processing
GO:0043170	0.000	1.176	1234.739	1311	5413	macromolecule metabolic process
GO:0006892	0.000	2.818	12.090	24	53	post-Golgi vesicle-mediated transport
GO:0033554	0.000	1.313	220.351	265	966	cellular response to stress
GO:0006396	0.000	1.428	119.984	154	526	RNA processing
GO:0009987	0.000	1.333	2201.682	2246	9652	cellular process
GO:0060537	0.000	1.661	55.202	79	242	muscle tissue development
GO:0051172	0.000	1.359	165.833	205	727	negative regulation of nitrogen compound metabolic process
GO:0000226	0.000	1.701	49.499	72	217	microtubule cytoskeleton organization
GO:0007568	0.000	1.767	42.200	63	185	aging
GO:0007507	0.000	1.569	69.801	96	306	heart development
GO:0007569	0.000	2.555	14.371	27	63	cell aging
GO:0007093	0.000	1.964	28.741	46	126	mitotic cell cycle checkpoint
GO:0031123	0.000	2.348	17.336	31	76	RNA 3'-end processing
GO:0014706	0.000	1.659	53.149	76	233	striated muscle tissue development
GO:0030177	0.000	2.724	12.318	24	54	positive regulation of Wnt receptor signaling pathway
GO:0034613	0.000	1.341	173.133	212	759	cellular protein localization
GO:0065009	0.000	1.245	344.897	397	1512	regulation of molecular function
GO:0000079	0.000	2.410	15.967	29	70	regulation of cyclin-dependent protein kinase activity
GO:0006950	0.000	1.201	551.105	613	2416	response to stress
GO:0045934	0.000	1.347	163.552	201	717	negative regulation of nucleobase-containing compound metabolic process
GO:0019220	0.000	1.337	172.676	211	757	regulation of phosphate metabolic process
GO:0051174	0.000	1.337	172.676	211	757	regulation of phosphorus metabolic process
GO:0042692	0.000	1.676	48.587	70	213	muscle cell differentiation
GO:0061024	0.000	1.523	75.731	102	332	membrane organization
GO:0009653	0.000	1.233	368.392	421	1615	anatomical structure morphogenesis
GO:0015980	0.000	1.578	62.957	87	276	energy derivation by oxidation of organic compounds
GO:0006893	0.000	7.638	2.965	9	13	Golgi to plasma membrane transport
GO:0072358	0.000	1.363	146.672	182	643	cardiovascular system development
GO:0072359	0.000	1.363	146.672	182	643	circulatory system development
GO:0044085	0.000	1.253	302.697	351	1327	cellular component biogenesis
GO:0042325	0.000	1.346	159.446	196	699	regulation of phosphorylation
GO:0070727	0.001	1.331	174.045	212	763	cellular macromolecule localization
GO:0010564	0.001	1.485	82.346	109	361	regulation of cell cycle process
GO:0034350	0.001	Inf	1.141	5	5	regulation of glial cell apoptotic process
GO:0034351	0.001	Inf	1.141	5	5	negative regulation of glial cell apoptotic process
GO:0022607	0.001	1.259	274.640	320	1204	cellular component assembly
GO:0061061	0.001	1.487	80.750	107	354	muscle structure development
GO:2000602	0.001	1.866	30.338	47	133	regulation of interphase of mitotic cell cycle
GO:0031175	0.001	1.377	128.652	161	564	neuron projection development
GO:0031589	0.001	1.710	41.743	61	183	cell-substrate adhesion
GO:0070887	0.001	1.243	305.206	352	1338	cellular response to chemical stimulus
GO:0050872	0.001	11.875	2.053	7	9	white fat cell differentiation
GO:0035411	0.001	5.659	3.650	10	16	catenin import into nucleus
GO:2000113	0.001	1.331	159.903	195	701	negative regulation of cellular macromolecule biosynthetic process
GO:0034349	0.001	20.351	1.597	6	7	glial cell apoptotic process
GO:0032386	0.001	1.757	36.269	54	159	regulation of intracellular transport
GO:0016044	0.001	1.491	75.275	100	330	cellular membrane organization
GO:0000209	0.001	1.821	31.479	48	138	protein polyubiquitination
GO:0010035	0.001	1.483	77.100	102	338	response to inorganic substance
GO:0032990	0.001	1.367	125.230	156	549	cell part morphogenesis
GO:0051098	0.001	1.778	33.304	50	146	regulation of binding
GO:0010941	0.001	1.261	243.846	285	1069	regulation of cell death
GO:0055001	0.001	1.922	25.320	40	111	muscle cell development
GO:0048858	0.001	1.368	122.721	153	538	cell projection morphogenesis
GO:0006974	0.001	1.379	113.141	142	496	response to DNA damage stimulus
GO:0006405	0.001	2.402	13.230	24	58	RNA export from nucleus
GO:0051146	0.001	1.760	33.532	50	147	striated muscle cell differentiation
GO:0043067	0.001	1.259	238.827	279	1047	regulation of programmed cell death
GO:0045444	0.001	1.934	23.951	38	105	fat cell differentiation
GO:0042981	0.001	1.258	237.231	277	1040	regulation of apoptotic process
GO:0016050	0.001	2.129	17.792	30	78	vesicle organization
GO:0007017	0.001	1.485	70.941	94	311	microtubule-based process
GO:0034637	0.001	2.495	11.862	22	52	cellular carbohydrate biosynthetic process
GO:0018394	0.001	1.941	23.267	37	102	peptidyl-lysine acetylation
GO:0045333	0.001	1.806	29.654	45	130	cellular respiration
GO:0000904	0.001	1.348	128.880	159	565	cell morphogenesis involved in differentiation
GO:0051289	0.001	2.551	11.177	21	49	protein homotetramerization
GO:0019222	0.001	1.156	840.800	903	3686	regulation of metabolic process
GO:0043001	0.001	6.787	2.737	8	12	Golgi to plasma membrane protein transport
GO:0070936	0.001	3.398	6.387	14	28	protein K48-linked ubiquitination
GO:0033692	0.002	2.692	9.809	19	43	cellular polysaccharide biosynthetic process
GO:0000084	0.002	1.808	28.969	44	127	S phase of mitotic cell cycle
GO:0018205	0.002	1.808	28.969	44	127	peptidyl-lysine modification
GO:0031323	0.002	1.159	754.804	815	3309	regulation of cellular metabolic process
GO:0030029	0.002	1.429	85.312	110	374	actin filament-based process
GO:0030198	0.002	1.742	33.075	49	145	extracellular matrix organization
GO:0090263	0.002	2.890	8.440	17	37	positive regulation of canonical Wnt receptor signaling pathway
GO:0031327	0.002	1.292	175.870	210	771	negative regulation of cellular biosynthetic process
GO:0042770	0.002	1.785	29.882	45	131	signal transduction in response to DNA damage
GO:0051640	0.002	1.785	29.882	45	131	organelle localization
GO:0006839	0.002	2.019	19.617	32	86	mitochondrial transport
GO:0043062	0.002	1.724	33.304	49	146	extracellular structure organization
GO:0010558	0.002	1.295	165.377	198	725	negative regulation of macromolecule biosynthetic process
GO:0006406	0.002	2.463	11.405	21	50	mRNA export from nucleus
GO:0045749	0.002	7.916	2.281	7	10	negative regulation of S phase of mitotic cell cycle
GO:0051340	0.002	1.972	20.530	33	90	regulation of ligase activity
GO:0060828	0.002	1.972	20.530	33	90	regulation of canonical Wnt receptor signaling pathway
GO:2000045	0.002	1.972	20.530	33	90	regulation of G1/S transition of mitotic cell cycle
GO:0008104	0.002	1.225	284.905	326	1249	protein localization
GO:0034330	0.002	1.675	36.725	53	161	cell junction organization
GO:0043484	0.002	2.519	10.721	20	47	regulation of RNA splicing
GO:0048024	0.002	3.705	5.246	12	23	regulation of nuclear mRNA splicing, via spliceosome
GO:0051301	0.002	1.419	84.171	108	369	cell division
GO:0048812	0.002	1.362	109.263	136	479	neuron projection morphogenesis
GO:0035412	0.002	5.091	3.422	9	15	regulation of catenin import into nucleus
GO:0034641	0.002	1.144	945.272	1006	4144	cellular nitrogen compound metabolic process
GO:0030199	0.002	3.171	6.615	14	29	collagen fibril organization
GO:0006807	0.002	1.143	954.625	1015	4185	nitrogen compound metabolic process
GO:0040007	0.002	1.310	142.338	172	624	growth
GO:0000377	0.002	1.622	40.375	57	177	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
GO:0000398	0.002	1.622	40.375	57	177	nuclear mRNA splicing, via spliceosome
GO:0042542	0.002	2.072	16.880	28	74	response to hydrogen peroxide
GO:0051095	0.003	10.174	1.825	6	8	regulation of helicase activity
GO:0010718	0.003	4.243	4.106	10	18	positive regulation of epithelial to mesenchymal transition
GO:0033687	0.003	4.243	4.106	10	18	osteoblast proliferation
GO:0048147	0.003	4.243	4.106	10	18	negative regulation of fibroblast proliferation
GO:0006366	0.003	1.230	254.110	292	1114	transcription from RNA polymerase II promoter
GO:0006357	0.003	1.253	207.349	242	909	regulation of transcription from RNA polymerase II promoter
GO:0001999	0.003	Inf	0.912	4	4	renal response to blood flow involved in circulatory renin-angiotensin regulation of systemic arterial blood pressure
GO:0003174	0.003	Inf	0.912	4	4	mitral valve development
GO:0003183	0.003	Inf	0.912	4	4	mitral valve morphogenesis
GO:0018076	0.003	Inf	0.912	4	4	N-terminal peptidyl-lysine acetylation
GO:0000075	0.003	1.547	49.043	67	215	cell cycle checkpoint
GO:0060255	0.003	1.150	717.622	773	3146	regulation of macromolecule metabolic process
GO:0080090	0.003	1.148	742.258	798	3254	regulation of primary metabolic process
GO:0000375	0.003	1.597	41.515	58	182	RNA splicing, via transesterification reactions
GO:0006260	0.003	1.524	51.780	70	227	DNA replication
GO:0036296	0.003	3.735	4.790	11	21	response to increased oxygen levels
GO:0055093	0.003	3.735	4.790	11	21	response to hyperoxia
GO:0031442	0.003	16.952	1.369	5	6	positive regulation of mRNA 3'-end processing
GO:0033689	0.003	16.952	1.369	5	6	negative regulation of osteoblast proliferation
GO:0033157	0.003	1.746	28.285	42	124	regulation of intracellular protein transport
GO:0046822	0.003	1.746	28.285	42	124	regulation of nucleocytoplasmic transport
GO:0009890	0.003	1.267	179.063	211	785	negative regulation of biosynthetic process
GO:0031145	0.003	2.028	17.108	28	75	anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0051320	0.003	1.705	30.794	45	135	S phase
GO:0050794	0.003	1.136	1355.864	1415	5944	regulation of cellular process
GO:0048666	0.003	1.294	146.900	176	644	neuron development
GO:0007091	0.003	2.718	8.212	16	36	mitotic metaphase/anaphase transition
GO:0034329	0.003	1.671	33.304	48	146	cell junction assembly
GO:0051186	0.003	1.542	47.674	65	209	cofactor metabolic process
GO:0051187	0.003	2.831	7.528	15	33	cofactor catabolic process
GO:0008380	0.003	1.471	60.676	80	266	RNA splicing
GO:0042060	0.004	1.314	126.143	153	553	wound healing
GO:0051351	0.004	1.974	18.020	29	79	positive regulation of ligase activity
GO:0051438	0.004	1.919	19.617	31	86	regulation of ubiquitin-protein ligase activity
GO:0055012	0.004	4.363	3.650	9	16	ventricular cardiac muscle cell differentiation
GO:0006084	0.004	2.392	10.493	19	46	acetyl-CoA metabolic process
GO:0051656	0.004	1.879	20.530	32	90	establishment of organelle localization
GO:0009894	0.004	1.366	91.243	114	400	regulation of catabolic process
GO:0051704	0.004	1.239	208.945	242	916	multi-organism process
GO:0045184	0.004	1.226	234.265	269	1027	establishment of protein localization
GO:0006473	0.004	1.748	26.232	39	115	protein acetylation
GO:0090304	0.004	1.141	743.626	797	3260	nucleic acid metabolic process
GO:0031396	0.004	1.652	32.847	47	144	regulation of protein ubiquitination
GO:0071901	0.004	1.997	16.652	27	73	negative regulation of protein serine/threonine kinase activity
GO:0044281	0.004	1.169	443.211	488	1943	small molecule metabolic process
GO:0009060	0.004	2.512	9.124	17	40	aerobic respiration
GO:0055015	0.004	5.936	2.509	7	11	ventricular cardiac muscle cell development
GO:0071844	0.004	1.243	197.996	230	868	cellular component assembly at cellular level
GO:0016071	0.004	1.317	116.790	142	512	mRNA metabolic process
GO:0030330	0.005	1.749	25.548	38	112	DNA damage response, signal transduction by p53 class mediator
GO:0000122	0.005	1.372	85.312	107	374	negative regulation of transcription from RNA polymerase II promoter
GO:0045598	0.005	2.266	11.405	20	50	regulation of fat cell differentiation
GO:0015031	0.005	1.224	227.422	261	997	protein transport
GO:0071241	0.005	1.891	19.161	30	84	cellular response to inorganic substance
GO:0071156	0.005	1.479	53.605	71	235	regulation of cell cycle arrest
GO:0032092	0.005	2.797	7.071	14	31	positive regulation of protein binding
GO:0006099	0.005	3.134	5.703	12	25	tricarboxylic acid cycle
GO:0072331	0.005	1.726	26.460	39	116	signal transduction by p53 class mediator
GO:0055006	0.005	2.943	6.387	13	28	cardiac cell development
GO:0055013	0.005	2.943	6.387	13	28	cardiac muscle cell development

CC test: Under-representation

Gene to GO CC test for under representation
GOCCID	Pvalue	OddsRatio	ExpCount	Count	Size	Term
GO:0005886	0.000	0.751	689.775	582	3075	plasma membrane
GO:0034702	0.000	0.228	35.891	10	160	ion channel complex
GO:0031224	0.000	0.760	742.714	634	3311	intrinsic to membrane
GO:0071944	0.000	0.764	702.561	600	3132	cell periphery
GO:0016021	0.000	0.771	725.666	624	3235	integral to membrane
GO:0005887	0.000	0.659	247.422	182	1103	integral to plasma membrane
GO:0031226	0.000	0.663	253.030	187	1128	intrinsic to plasma membrane
GO:0044459	0.000	0.742	394.798	322	1760	plasma membrane part
GO:0044425	0.000	0.804	894.576	798	3988	membrane part
GO:0034703	0.000	0.242	23.778	7	106	cation channel complex
GO:0008076	0.001	0.250	13.235	4	59	voltage-gated potassium channel complex
GO:0034705	0.001	0.250	13.235	4	59	potassium channel complex

CC test: Over-representation

Gene to GO CC test for over representation
GOCCID	Pvalue	OddsRatio	ExpCount	Count	Size	Term
GO:0044424	0.000	1.978	1978.252	2192	8819	intracellular part
GO:0005622	0.000	2.023	2019.526	2227	9003	intracellular
GO:0005737	0.000	1.696	1535.674	1779	6846	cytoplasm
GO:0044444	0.000	1.605	1158.597	1393	5165	cytoplasmic part
GO:0043227	0.000	1.566	1563.265	1769	6969	membrane-bounded organelle
GO:0043229	0.000	1.592	1717.820	1913	7658	intracellular organelle
GO:0043231	0.000	1.557	1561.471	1765	6961	intracellular membrane-bounded organelle
GO:0043226	0.000	1.590	1720.736	1915	7671	organelle
GO:0044422	0.000	1.517	1072.684	1277	4782	organelle part
GO:0044446	0.000	1.515	1057.879	1261	4716	intracellular organelle part
GO:0031974	0.000	1.503	493.049	627	2198	membrane-enclosed lumen
GO:0043233	0.000	1.474	484.300	610	2159	organelle lumen
GO:0070013	0.000	1.469	474.430	597	2115	intracellular organelle lumen
GO:0005829	0.000	1.472	443.699	561	1978	cytosol
GO:0044428	0.000	1.436	451.999	563	2015	nuclear part
GO:0044464	0.000	1.590	2297.455	2376	10242	cell part
GO:0005623	0.000	1.588	2297.679	2376	10243	cell
GO:0031981	0.000	1.409	385.377	478	1718	nuclear lumen
GO:0031090	0.000	1.393	394.125	485	1757	organelle membrane
GO:0005654	0.000	1.455	279.050	357	1244	nucleoplasm
GO:0031967	0.000	1.659	137.731	195	614	organelle envelope
GO:0005739	0.000	1.478	248.319	322	1107	mitochondrion
GO:0005634	0.000	1.276	980.714	1097	4372	nucleus
GO:0031975	0.000	1.627	139.525	195	622	envelope
GO:0044429	0.000	1.643	126.290	178	563	mitochondrial part
GO:0005794	0.000	1.403	199.866	252	891	Golgi apparatus
GO:0043228	0.000	1.256	524.677	601	2339	non-membrane-bounded organelle
GO:0043232	0.000	1.256	524.677	601	2339	intracellular non-membrane-bounded organelle
GO:0043234	0.000	1.239	565.279	641	2520	protein complex
GO:0005635	0.000	1.799	51.593	78	230	nuclear envelope
GO:0031966	0.000	1.587	83.670	116	373	mitochondrial membrane
GO:0032991	0.000	1.215	668.465	745	2980	macromolecular complex
GO:0005775	0.000	4.633	6.281	16	28	vacuolar lumen
GO:0031965	0.000	2.019	31.853	52	142	nuclear membrane
GO:0005740	0.000	1.551	87.932	120	392	mitochondrial envelope
GO:0043202	0.000	4.737	5.832	15	26	lysosomal lumen
GO:0031970	0.000	3.189	10.319	22	46	organelle envelope lumen
GO:0044451	0.000	1.392	149.171	188	665	nucleoplasm part
GO:0005811	0.000	3.476	8.524	19	38	lipid particle
GO:0044420	0.000	1.943	30.731	49	137	extracellular matrix part
GO:0005759	0.000	1.682	51.817	75	231	mitochondrial matrix
GO:0005758	0.000	3.302	8.748	19	39	mitochondrial intermembrane space
GO:0005856	0.000	1.269	293.631	344	1309	cytoskeleton
GO:0012505	0.000	1.261	298.342	348	1330	endomembrane system
GO:0005938	0.000	1.854	32.975	51	147	cell cortex
GO:0016604	0.000	1.647	51.144	73	228	nuclear body
GO:0000922	0.001	2.377	15.478	28	69	spindle pole
GO:0000323	0.001	1.605	55.631	78	248	lytic vacuole
GO:0005764	0.001	1.605	55.631	78	248	lysosome
GO:0031012	0.001	1.515	73.576	99	328	extracellular matrix
GO:0005876	0.001	3.127	8.524	18	38	spindle microtubule
GO:0034399	0.001	2.270	17.048	30	76	nuclear periphery
GO:0015630	0.001	1.350	147.376	182	657	microtubule cytoskeleton
GO:0044430	0.001	1.292	207.045	247	923	cytoskeletal part
GO:0000139	0.001	1.447	90.624	118	404	Golgi membrane
GO:0005604	0.001	2.348	15.029	27	67	basement membrane
GO:0016363	0.001	2.348	15.029	27	67	nuclear matrix
GO:0005743	0.001	1.557	58.995	81	263	mitochondrial inner membrane
GO:0019866	0.001	1.530	64.155	87	286	organelle inner membrane
GO:0005773	0.001	1.512	66.174	89	295	vacuole
GO:0044427	0.001	1.422	93.316	120	416	chromosomal part
GO:0005789	0.001	1.354	127.412	158	568	endoplasmic reticulum membrane
GO:0005643	0.001	2.384	13.235	24	59	nuclear pore
GO:0048471	0.001	1.435	85.689	111	382	perinuclear region of cytoplasm
GO:0015629	0.001	1.497	66.622	89	297	actin cytoskeleton
GO:0030175	0.002	2.640	9.870	19	44	filopodium
GO:0044437	0.002	1.695	35.666	52	159	vacuolar part
GO:0043034	0.002	5.202	3.365	9	15	costamere
GO:0005578	0.002	1.498	60.566	81	270	proteinaceous extracellular matrix
GO:0005783	0.002	1.258	208.166	244	928	endoplasmic reticulum
GO:0005827	0.003	Inf	0.897	4	4	polar microtubule
GO:0005663	0.003	17.322	1.346	5	6	DNA replication factor C complex
GO:0042175	0.003	1.314	130.104	158	580	nuclear outer membrane-endoplasmic reticulum membrane network
GO:0005657	0.004	2.858	6.954	14	31	replication fork
GO:0031252	0.004	1.526	46.434	63	207	cell leading edge

T vs N

MF test: Under-representation

Gene to GO MF test for under representation
GOMFID	Pvalue	OddsRatio	ExpCount	Count	Size	Term
GO:0004930	0.000	0.267	82.062	27	366	G-protein coupled receptor activity
GO:0004888	0.000	0.469	157.846	87	704	transmembrane signaling receptor activity
GO:0038023	0.000	0.503	177.129	104	790	signaling receptor activity
GO:0004872	0.000	0.573	215.918	142	963	receptor activity
GO:0022838	0.000	0.361	67.488	29	301	substrate-specific channel activity
GO:0005216	0.000	0.358	65.695	28	293	ion channel activity
GO:0015267	0.000	0.380	71.076	32	317	channel activity
GO:0022803	0.000	0.380	71.076	32	317	passive transmembrane transporter activity
GO:0022836	0.000	0.335	52.466	21	234	gated channel activity
GO:0005261	0.000	0.371	47.982	21	214	cation channel activity
GO:0004871	0.000	0.684	235.200	178	1049	signal transducer activity
GO:0060089	0.000	0.684	235.200	178	1049	molecular transducer activity
GO:0004896	0.000	0.139	17.264	3	77	cytokine receptor activity
GO:0008528	0.000	0.219	22.421	6	100	G-protein coupled peptide receptor activity
GO:0015075	0.000	0.605	122.645	83	547	ion transmembrane transporter activity
GO:0005125	0.000	0.365	37.219	16	166	cytokine activity
GO:0046873	0.000	0.504	64.349	37	287	metal ion transmembrane transporter activity
GO:0001653	0.000	0.255	22.646	7	101	peptide receptor activity
GO:0015276	0.000	0.297	25.336	9	113	ligand-gated ion channel activity
GO:0022834	0.000	0.297	25.336	9	113	ligand-gated channel activity
GO:0005230	0.000	0.119	13.453	2	60	extracellular ligand-gated ion channel activity
GO:0005244	0.000	0.343	29.596	12	132	voltage-gated ion channel activity
GO:0022832	0.000	0.343	29.596	12	132	voltage-gated channel activity
GO:0004984	0.000	0.000	8.744	0	39	olfactory receptor activity
GO:0022891	0.000	0.666	143.272	105	639	substrate-specific transmembrane transporter activity
GO:0005179	0.000	0.254	19.507	6	87	hormone activity
GO:0022892	0.000	0.700	168.609	129	752	substrate-specific transporter activity
GO:0022843	0.000	0.322	23.542	9	105	voltage-gated cation channel activity
GO:0022857	0.000	0.696	156.501	119	698	transmembrane transporter activity
GO:0005249	0.000	0.181	13.453	3	60	voltage-gated potassium channel activity
GO:0030594	0.000	0.184	13.229	3	59	neurotransmitter receptor activity
GO:0022890	0.000	0.610	79.820	54	356	inorganic cation transmembrane transporter activity
GO:0008227	0.000	0.086	9.193	1	41	G-protein coupled amine receptor activity
GO:0008324	0.000	0.643	94.618	67	422	cation transmembrane transporter activity
GO:0015079	0.001	0.351	21.749	9	97	potassium ion transmembrane transporter activity
GO:0005267	0.001	0.317	18.610	7	83	potassium channel activity
GO:0005231	0.002	0.168	9.641	2	43	excitatory extracellular ligand-gated ion channel activity
GO:0015077	0.002	0.604	55.381	37	247	monovalent inorganic cation transmembrane transporter activity
GO:0008509	0.002	0.458	26.681	14	119	anion transmembrane transporter activity
GO:0008188	0.004	0.115	6.951	1	31	neuropeptide receptor activity
GO:0005126	0.005	0.587	41.480	27	185	cytokine receptor binding

MF test: Over-representation

Gene to GO MF test for over representation
GOMFID	Pvalue	OddsRatio	ExpCount	Count	Size	Term
GO:0005515	0.000	1.575	1301.784	1508	5806	protein binding
GO:0019899	0.000	1.533	198.877	265	887	enzyme binding
GO:0005488	0.000	1.378	1972.407	2055	8797	binding
GO:0003824	0.000	1.241	897.527	993	4003	catalytic activity
GO:0042802	0.000	1.476	149.775	196	668	identical protein binding
GO:0004860	0.000	4.063	8.744	21	39	protein kinase inhibitor activity
GO:0000166	0.000	1.277	415.916	484	1855	nucleotide binding
GO:1901265	0.000	1.276	416.140	484	1856	nucleoside phosphate binding
GO:0097159	0.000	1.275	416.365	484	1857	organic cyclic compound binding
GO:0003713	0.000	1.801	52.242	79	233	transcription coactivator activity
GO:0000988	0.000	1.564	94.170	129	420	protein binding transcription factor activity
GO:0019900	0.000	1.643	73.990	105	330	kinase binding
GO:0000989	0.000	1.563	91.255	125	407	transcription factor binding transcription factor activity
GO:0019210	0.000	3.656	9.193	21	41	kinase inhibitor activity
GO:0003712	0.000	1.556	88.564	121	395	transcription cofactor activity
GO:0019887	0.000	2.417	19.731	36	88	protein kinase regulator activity
GO:0019901	0.000	1.653	66.591	95	297	protein kinase binding
GO:0004842	0.000	1.807	42.152	64	188	ubiquitin-protein ligase activity
GO:0016874	0.000	1.543	79.372	108	354	ligase activity
GO:0031625	0.000	2.009	28.251	46	126	ubiquitin protein ligase binding
GO:0044389	0.000	2.009	28.251	46	126	small conjugating protein ligase binding
GO:0005520	0.000	5.020	4.933	13	22	insulin-like growth factor binding
GO:0016879	0.000	1.658	55.157	79	246	ligase activity, forming carbon-nitrogen bonds
GO:0016881	0.000	1.703	48.654	71	217	acid-amino acid ligase activity
GO:0036094	0.000	1.219	449.997	508	2007	small molecule binding
GO:0000287	0.000	1.879	32.063	50	143	magnesium ion binding
GO:0003682	0.000	1.689	47.533	69	212	chromatin binding
GO:0019787	0.000	1.711	45.067	66	201	small conjugating protein ligase activity
GO:0019207	0.000	2.071	22.870	38	102	kinase regulator activity
GO:0048407	0.001	9.254	2.466	8	11	platelet-derived growth factor binding
GO:0016538	0.001	6.248	3.139	9	14	cyclin-dependent protein kinase regulator activity
GO:0003723	0.001	1.330	147.308	180	657	RNA binding
GO:0030291	0.001	4.959	3.812	10	17	protein serine/threonine kinase inhibitor activity
GO:0030374	0.001	3.090	7.623	16	34	ligand-dependent nuclear receptor transcription coactivator activity
GO:0043566	0.001	1.661	40.358	58	180	structure-specific DNA binding
GO:0046983	0.002	1.320	147.308	179	657	protein dimerization activity
GO:0003729	0.002	2.074	16.816	28	75	mRNA binding
GO:0033192	0.003	Inf	0.897	4	4	calmodulin-dependent protein phosphatase activity
GO:0051425	0.003	Inf	0.897	4	4	PTB domain binding
GO:0043531	0.003	3.819	4.708	11	21	ADP binding
GO:0019838	0.003	1.880	21.749	34	97	growth factor binding
GO:0042803	0.003	1.355	99.775	124	445	protein homodimerization activity
GO:0035639	0.004	1.197	320.850	361	1431	purine ribonucleoside triphosphate binding
GO:0032555	0.004	1.195	326.679	367	1457	purine ribonucleotide binding
GO:0017076	0.004	1.194	328.697	369	1466	purine nucleotide binding
GO:0019205	0.004	2.742	7.623	15	34	nucleobase-containing compound kinase activity
GO:0032553	0.004	1.193	326.903	367	1458	ribonucleotide binding

BP test: Under-representation

Gene to GO BP test for under representation
GOBPID	Pvalue	OddsRatio	ExpCount	Count	Size	Term
GO:0007186	0.000	0.511	117.247	69	514	G-protein coupled receptor signaling pathway
GO:0007267	0.000	0.665	205.752	152	902	cell-cell signaling
GO:0007268	0.000	0.594	119.984	80	526	synaptic transmission
GO:0019226	0.000	0.619	134.583	93	590	transmission of nerve impulse
GO:0035637	0.000	0.634	136.179	96	597	multicellular organismal signaling
GO:0050877	0.000	0.717	214.420	168	940	neurological system process
GO:0007586	0.000	0.324	20.758	8	91	digestion
GO:0009583	0.000	0.000	6.843	0	30	detection of light stimulus
GO:0007631	0.000	0.259	15.967	5	70	feeding behavior
GO:0007606	0.001	0.236	13.914	4	61	sensory perception of chemical stimulus
GO:0050907	0.001	0.000	6.387	0	28	detection of chemical stimulus involved in sensory perception
GO:0051606	0.001	0.442	29.426	15	129	detection of stimulus
GO:0007602	0.001	0.000	5.931	0	26	phototransduction
GO:0007600	0.001	0.650	81.206	58	356	sensory perception
GO:0030810	0.001	0.254	13.002	4	57	positive regulation of nucleotide biosynthetic process
GO:1900373	0.001	0.254	13.002	4	57	positive regulation of purine nucleotide biosynthetic process
GO:0030804	0.002	0.259	12.774	4	56	positive regulation of cyclic nucleotide biosynthetic process
GO:0072503	0.002	0.580	49.499	32	217	cellular divalent inorganic cation homeostasis
GO:0009593	0.002	0.264	12.546	4	55	detection of chemical stimulus
GO:0007187	0.002	0.492	30.338	17	133	G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger
GO:0051480	0.003	0.526	35.356	21	155	cytosolic calcium ion homeostasis
GO:0014072	0.003	0.000	5.246	0	23	response to isoquinoline alkaloid
GO:0043278	0.003	0.000	5.246	0	23	response to morphine
GO:0006874	0.003	0.587	47.446	31	208	cellular calcium ion homeostasis
GO:0072507	0.003	0.605	52.236	35	229	divalent inorganic cation homeostasis
GO:0045981	0.003	0.306	13.686	5	60	positive regulation of nucleotide metabolic process
GO:1900544	0.003	0.306	13.686	5	60	positive regulation of purine nucleotide metabolic process
GO:0007620	0.003	0.000	5.018	0	22	copulation
GO:0030808	0.004	0.404	19.161	9	84	regulation of nucleotide biosynthetic process
GO:1900371	0.004	0.404	19.161	9	84	regulation of purine nucleotide biosynthetic process
GO:0048483	0.004	0.187	8.668	2	38	autonomic nervous system development
GO:0030802	0.004	0.409	18.933	9	83	regulation of cyclic nucleotide biosynthetic process
GO:0042088	0.004	0.116	6.843	1	30	T-helper 1 type immune response
GO:0030801	0.004	0.318	13.230	5	58	positive regulation of cyclic nucleotide metabolic process
GO:0055074	0.005	0.617	49.955	34	219	calcium ion homeostasis
GO:0030816	0.005	0.287	11.633	4	51	positive regulation of cAMP metabolic process
GO:0030819	0.005	0.287	11.633	4	51	positive regulation of cAMP biosynthetic process
GO:0050906	0.005	0.287	11.633	4	51	detection of stimulus involved in sensory perception
GO:0007204	0.005	0.542	32.847	20	144	elevation of cytosolic calcium ion concentration

BP test: Over-representation

Gene to GO BP test for over representation
GOBPID	Pvalue	OddsRatio	ExpCount	Count	Size	Term
GO:0016043	0.000	1.404	726.975	865	3187	cellular component organization
GO:0071840	0.000	1.390	747.276	883	3276	cellular component organization or biogenesis
GO:0071842	0.000	1.394	586.005	705	2569	cellular component organization at cellular level
GO:0071841	0.000	1.378	605.850	723	2656	cellular component organization or biogenesis at cellular level
GO:0006996	0.000	1.451	372.269	469	1632	organelle organization
GO:0007049	0.000	1.509	254.567	333	1116	cell cycle
GO:0044237	0.000	1.302	1484.744	1601	6509	cellular metabolic process
GO:0044267	0.000	1.334	588.970	692	2582	cellular protein metabolic process
GO:0010605	0.000	1.481	240.880	312	1056	negative regulation of macromolecule metabolic process
GO:0051726	0.000	1.645	138.232	194	606	regulation of cell cycle
GO:0048523	0.000	1.336	519.626	615	2278	negative regulation of cellular process
GO:0008285	0.000	1.749	102.192	150	448	negative regulation of cell proliferation
GO:0008152	0.000	1.297	1623.889	1730	7119	metabolic process
GO:0009056	0.000	1.380	367.023	449	1609	catabolic process
GO:0031324	0.000	1.460	239.055	307	1048	negative regulation of cellular metabolic process
GO:0045786	0.000	1.795	87.593	131	384	negative regulation of cell cycle
GO:0030163	0.000	1.753	93.067	137	408	protein catabolic process
GO:0032269	0.000	1.832	76.416	116	335	negative regulation of cellular protein metabolic process
GO:0006464	0.000	1.330	454.844	540	1994	cellular protein modification process
GO:0036211	0.000	1.330	454.844	540	1994	protein modification process
GO:0046907	0.000	1.473	209.858	272	920	intracellular transport
GO:0044238	0.000	1.267	1503.449	1607	6591	primary metabolic process
GO:0009892	0.000	1.423	259.357	327	1137	negative regulation of metabolic process
GO:0031400	0.000	1.948	60.676	96	266	negative regulation of protein modification process
GO:0044419	0.000	1.766	85.084	126	373	interspecies interaction between organisms
GO:0043412	0.000	1.318	469.671	554	2059	macromolecule modification
GO:0048519	0.000	1.293	568.441	658	2492	negative regulation of biological process
GO:0009057	0.000	1.535	156.025	209	684	macromolecule catabolic process
GO:0019941	0.000	1.849	68.660	105	301	modification-dependent protein catabolic process
GO:0042127	0.000	1.439	220.351	281	966	regulation of cell proliferation
GO:0008283	0.000	1.383	289.923	358	1271	cell proliferation
GO:0044248	0.000	1.368	313.874	384	1376	cellular catabolic process
GO:0043632	0.000	1.830	69.116	105	303	modification-dependent macromolecule catabolic process
GO:0010563	0.000	2.136	41.059	69	180	negative regulation of phosphorus metabolic process
GO:0045936	0.000	2.136	41.059	69	180	negative regulation of phosphate metabolic process
GO:0070647	0.000	1.616	112.685	157	494	protein modification by small protein conjugation or removal
GO:0051248	0.000	1.722	85.084	124	373	negative regulation of protein metabolic process
GO:0051603	0.000	1.792	72.082	108	316	proteolysis involved in cellular protein catabolic process
GO:0032268	0.000	1.420	227.878	288	999	regulation of cellular protein metabolic process
GO:0001933	0.000	2.162	37.181	63	163	negative regulation of protein phosphorylation
GO:0033673	0.000	2.328	29.882	53	131	negative regulation of kinase activity
GO:0032446	0.000	1.620	100.139	140	439	protein modification by small protein conjugation
GO:0019538	0.000	1.250	690.706	778	3028	protein metabolic process
GO:0042326	0.000	2.078	39.919	66	175	negative regulation of phosphorylation
GO:0044257	0.000	1.733	74.363	109	326	cellular protein catabolic process
GO:0007010	0.000	1.504	143.479	190	629	cytoskeleton organization
GO:0051348	0.000	2.244	31.707	55	139	negative regulation of transferase activity
GO:0022402	0.000	1.430	192.294	245	843	cell cycle process
GO:0006469	0.000	2.345	28.057	50	123	negative regulation of protein kinase activity
GO:0016310	0.000	1.371	245.670	303	1077	phosphorylation
GO:0016265	0.000	1.322	327.561	392	1436	death
GO:0006511	0.000	1.748	67.063	99	294	ubiquitin-dependent protein catabolic process
GO:0007050	0.000	1.707	73.678	107	323	cell cycle arrest
GO:0008219	0.000	1.321	326.876	391	1433	cell death
GO:0016567	0.000	1.610	93.980	131	412	protein ubiquitination
GO:0006796	0.000	1.341	285.589	346	1252	phosphate-containing compound metabolic process
GO:0012501	0.000	1.334	296.766	358	1301	programmed cell death
GO:0006793	0.000	1.339	285.817	346	1253	phosphorus metabolic process
GO:0044260	0.000	1.213	1127.529	1218	4943	cellular macromolecule metabolic process
GO:0000902	0.000	1.438	166.061	213	728	cell morphogenesis
GO:0006915	0.000	1.329	294.029	354	1289	apoptotic process
GO:0048522	0.000	1.245	588.286	666	2579	positive regulation of cellular process
GO:0031399	0.000	1.409	186.819	236	819	regulation of protein modification process
GO:0051325	0.000	1.650	79.609	113	349	interphase
GO:0010498	0.000	1.944	42.884	68	188	proteasomal protein catabolic process
GO:0051028	0.000	2.485	21.670	40	95	mRNA transport
GO:0051329	0.000	1.656	78.012	111	342	interphase of mitotic cell cycle
GO:0051641	0.000	1.293	365.426	430	1602	cellular localization
GO:0000278	0.000	1.462	144.619	188	634	mitotic cell cycle
GO:0043161	0.000	1.951	41.515	66	182	proteasomal ubiquitin-dependent protein catabolic process
GO:0032989	0.000	1.415	175.870	223	771	cellular component morphogenesis
GO:0007044	0.000	3.175	12.774	27	56	cell-substrate junction assembly
GO:0043549	0.000	1.500	120.668	160	529	regulation of kinase activity
GO:0007346	0.000	1.738	59.764	88	262	regulation of mitotic cell cycle
GO:0031124	0.000	2.843	15.055	30	66	mRNA 3'-end processing
GO:0045859	0.000	1.502	115.194	153	505	regulation of protein kinase activity
GO:0006468	0.000	1.360	216.929	267	951	protein phosphorylation
GO:0048193	0.000	2.093	31.251	52	137	Golgi vesicle transport
GO:0051338	0.000	1.480	124.090	163	544	regulation of transferase activity
GO:0045930	0.000	4.042	7.984	19	35	negative regulation of mitotic cell cycle
GO:0055114	0.000	1.515	106.982	143	469	oxidation-reduction process
GO:0015931	0.000	2.121	29.198	49	128	nucleobase-containing compound transport
GO:0051253	0.000	1.430	147.585	189	647	negative regulation of RNA metabolic process
GO:0006913	0.000	1.673	64.782	93	284	nucleocytoplasmic transport
GO:0048518	0.000	1.219	641.891	716	2814	positive regulation of biological process
GO:0022403	0.000	1.414	155.112	197	680	cell cycle phase
GO:0051246	0.000	1.319	258.673	311	1134	regulation of protein metabolic process
GO:0048145	0.000	3.042	12.090	25	53	regulation of fibroblast proliferation
GO:0044092	0.000	1.451	128.880	167	565	negative regulation of molecular function
GO:0051169	0.000	1.656	65.238	93	286	nuclear transport
GO:0006403	0.000	2.136	26.688	45	117	RNA localization
GO:0051168	0.000	2.317	21.442	38	94	nuclear export
GO:0090398	0.000	5.289	5.246	14	23	cellular senescence
GO:0051649	0.000	1.278	326.876	383	1433	establishment of localization in cell
GO:0050657	0.000	2.160	25.320	43	111	nucleic acid transport
GO:0050658	0.000	2.160	25.320	43	111	RNA transport
GO:0051236	0.000	2.160	25.320	43	111	establishment of RNA localization
GO:0007265	0.000	1.776	47.446	71	208	Ras protein signal transduction
GO:0043086	0.000	1.506	98.998	132	434	negative regulation of catalytic activity
GO:0044265	0.000	1.438	127.283	164	558	cellular macromolecule catabolic process
GO:0000082	0.000	1.867	38.778	60	170	G1/S transition of mitotic cell cycle
GO:0051262	0.000	2.517	16.652	31	73	protein tetramerization
GO:0051128	0.000	1.324	220.807	267	968	regulation of cellular component organization
GO:0045892	0.000	1.405	142.110	180	623	negative regulation of transcription, DNA-dependent
GO:0048144	0.000	2.839	12.546	25	55	fibroblast proliferation
GO:0030030	0.000	1.373	164.693	205	722	cell projection organization
GO:0050790	0.000	1.290	272.815	323	1196	regulation of catalytic activity
GO:0006091	0.000	1.525	86.908	117	381	generation of precursor metabolites and energy
GO:0050684	0.000	3.855	7.299	17	32	regulation of mRNA processing
GO:0035556	0.000	1.267	324.367	378	1422	intracellular signal transduction
GO:0010629	0.000	1.374	158.078	197	693	negative regulation of gene expression
GO:0033036	0.000	1.259	333.491	387	1462	macromolecule localization
GO:0001932	0.000	1.383	150.094	188	658	regulation of protein phosphorylation
GO:0006397	0.000	1.563	73.678	101	323	mRNA processing
GO:0043170	0.000	1.176	1234.739	1311	5413	macromolecule metabolic process
GO:0006892	0.000	2.818	12.090	24	53	post-Golgi vesicle-mediated transport
GO:0033554	0.000	1.313	220.351	265	966	cellular response to stress
GO:0006396	0.000	1.428	119.984	154	526	RNA processing
GO:0009987	0.000	1.333	2201.682	2246	9652	cellular process
GO:0060537	0.000	1.661	55.202	79	242	muscle tissue development
GO:0051172	0.000	1.359	165.833	205	727	negative regulation of nitrogen compound metabolic process
GO:0000226	0.000	1.701	49.499	72	217	microtubule cytoskeleton organization
GO:0007568	0.000	1.767	42.200	63	185	aging
GO:0007507	0.000	1.569	69.801	96	306	heart development
GO:0007569	0.000	2.555	14.371	27	63	cell aging
GO:0007093	0.000	1.964	28.741	46	126	mitotic cell cycle checkpoint
GO:0031123	0.000	2.348	17.336	31	76	RNA 3'-end processing
GO:0014706	0.000	1.659	53.149	76	233	striated muscle tissue development
GO:0030177	0.000	2.724	12.318	24	54	positive regulation of Wnt receptor signaling pathway
GO:0034613	0.000	1.341	173.133	212	759	cellular protein localization
GO:0065009	0.000	1.245	344.897	397	1512	regulation of molecular function
GO:0000079	0.000	2.410	15.967	29	70	regulation of cyclin-dependent protein kinase activity
GO:0006950	0.000	1.201	551.105	613	2416	response to stress
GO:0045934	0.000	1.347	163.552	201	717	negative regulation of nucleobase-containing compound metabolic process
GO:0019220	0.000	1.337	172.676	211	757	regulation of phosphate metabolic process
GO:0051174	0.000	1.337	172.676	211	757	regulation of phosphorus metabolic process
GO:0042692	0.000	1.676	48.587	70	213	muscle cell differentiation
GO:0061024	0.000	1.523	75.731	102	332	membrane organization
GO:0009653	0.000	1.233	368.392	421	1615	anatomical structure morphogenesis
GO:0015980	0.000	1.578	62.957	87	276	energy derivation by oxidation of organic compounds
GO:0006893	0.000	7.638	2.965	9	13	Golgi to plasma membrane transport
GO:0072358	0.000	1.363	146.672	182	643	cardiovascular system development
GO:0072359	0.000	1.363	146.672	182	643	circulatory system development
GO:0044085	0.000	1.253	302.697	351	1327	cellular component biogenesis
GO:0042325	0.000	1.346	159.446	196	699	regulation of phosphorylation
GO:0070727	0.001	1.331	174.045	212	763	cellular macromolecule localization
GO:0010564	0.001	1.485	82.346	109	361	regulation of cell cycle process
GO:0034350	0.001	Inf	1.141	5	5	regulation of glial cell apoptotic process
GO:0034351	0.001	Inf	1.141	5	5	negative regulation of glial cell apoptotic process
GO:0022607	0.001	1.259	274.640	320	1204	cellular component assembly
GO:0061061	0.001	1.487	80.750	107	354	muscle structure development
GO:2000602	0.001	1.866	30.338	47	133	regulation of interphase of mitotic cell cycle
GO:0031175	0.001	1.377	128.652	161	564	neuron projection development
GO:0031589	0.001	1.710	41.743	61	183	cell-substrate adhesion
GO:0070887	0.001	1.243	305.206	352	1338	cellular response to chemical stimulus
GO:0050872	0.001	11.875	2.053	7	9	white fat cell differentiation
GO:0035411	0.001	5.659	3.650	10	16	catenin import into nucleus
GO:2000113	0.001	1.331	159.903	195	701	negative regulation of cellular macromolecule biosynthetic process
GO:0034349	0.001	20.351	1.597	6	7	glial cell apoptotic process
GO:0032386	0.001	1.757	36.269	54	159	regulation of intracellular transport
GO:0016044	0.001	1.491	75.275	100	330	cellular membrane organization
GO:0000209	0.001	1.821	31.479	48	138	protein polyubiquitination
GO:0010035	0.001	1.483	77.100	102	338	response to inorganic substance
GO:0032990	0.001	1.367	125.230	156	549	cell part morphogenesis
GO:0051098	0.001	1.778	33.304	50	146	regulation of binding
GO:0010941	0.001	1.261	243.846	285	1069	regulation of cell death
GO:0055001	0.001	1.922	25.320	40	111	muscle cell development
GO:0048858	0.001	1.368	122.721	153	538	cell projection morphogenesis
GO:0006974	0.001	1.379	113.141	142	496	response to DNA damage stimulus
GO:0006405	0.001	2.402	13.230	24	58	RNA export from nucleus
GO:0051146	0.001	1.760	33.532	50	147	striated muscle cell differentiation
GO:0043067	0.001	1.259	238.827	279	1047	regulation of programmed cell death
GO:0045444	0.001	1.934	23.951	38	105	fat cell differentiation
GO:0042981	0.001	1.258	237.231	277	1040	regulation of apoptotic process
GO:0016050	0.001	2.129	17.792	30	78	vesicle organization
GO:0007017	0.001	1.485	70.941	94	311	microtubule-based process
GO:0034637	0.001	2.495	11.862	22	52	cellular carbohydrate biosynthetic process
GO:0018394	0.001	1.941	23.267	37	102	peptidyl-lysine acetylation
GO:0045333	0.001	1.806	29.654	45	130	cellular respiration
GO:0000904	0.001	1.348	128.880	159	565	cell morphogenesis involved in differentiation
GO:0051289	0.001	2.551	11.177	21	49	protein homotetramerization
GO:0019222	0.001	1.156	840.800	903	3686	regulation of metabolic process
GO:0043001	0.001	6.787	2.737	8	12	Golgi to plasma membrane protein transport
GO:0070936	0.001	3.398	6.387	14	28	protein K48-linked ubiquitination
GO:0033692	0.002	2.692	9.809	19	43	cellular polysaccharide biosynthetic process
GO:0000084	0.002	1.808	28.969	44	127	S phase of mitotic cell cycle
GO:0018205	0.002	1.808	28.969	44	127	peptidyl-lysine modification
GO:0031323	0.002	1.159	754.804	815	3309	regulation of cellular metabolic process
GO:0030029	0.002	1.429	85.312	110	374	actin filament-based process
GO:0030198	0.002	1.742	33.075	49	145	extracellular matrix organization
GO:0090263	0.002	2.890	8.440	17	37	positive regulation of canonical Wnt receptor signaling pathway
GO:0031327	0.002	1.292	175.870	210	771	negative regulation of cellular biosynthetic process
GO:0042770	0.002	1.785	29.882	45	131	signal transduction in response to DNA damage
GO:0051640	0.002	1.785	29.882	45	131	organelle localization
GO:0006839	0.002	2.019	19.617	32	86	mitochondrial transport
GO:0043062	0.002	1.724	33.304	49	146	extracellular structure organization
GO:0010558	0.002	1.295	165.377	198	725	negative regulation of macromolecule biosynthetic process
GO:0006406	0.002	2.463	11.405	21	50	mRNA export from nucleus
GO:0045749	0.002	7.916	2.281	7	10	negative regulation of S phase of mitotic cell cycle
GO:0051340	0.002	1.972	20.530	33	90	regulation of ligase activity
GO:0060828	0.002	1.972	20.530	33	90	regulation of canonical Wnt receptor signaling pathway
GO:2000045	0.002	1.972	20.530	33	90	regulation of G1/S transition of mitotic cell cycle
GO:0008104	0.002	1.225	284.905	326	1249	protein localization
GO:0034330	0.002	1.675	36.725	53	161	cell junction organization
GO:0043484	0.002	2.519	10.721	20	47	regulation of RNA splicing
GO:0048024	0.002	3.705	5.246	12	23	regulation of nuclear mRNA splicing, via spliceosome
GO:0051301	0.002	1.419	84.171	108	369	cell division
GO:0048812	0.002	1.362	109.263	136	479	neuron projection morphogenesis
GO:0035412	0.002	5.091	3.422	9	15	regulation of catenin import into nucleus
GO:0034641	0.002	1.144	945.272	1006	4144	cellular nitrogen compound metabolic process
GO:0030199	0.002	3.171	6.615	14	29	collagen fibril organization
GO:0006807	0.002	1.143	954.625	1015	4185	nitrogen compound metabolic process
GO:0040007	0.002	1.310	142.338	172	624	growth
GO:0000377	0.002	1.622	40.375	57	177	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
GO:0000398	0.002	1.622	40.375	57	177	nuclear mRNA splicing, via spliceosome
GO:0042542	0.002	2.072	16.880	28	74	response to hydrogen peroxide
GO:0051095	0.003	10.174	1.825	6	8	regulation of helicase activity
GO:0010718	0.003	4.243	4.106	10	18	positive regulation of epithelial to mesenchymal transition
GO:0033687	0.003	4.243	4.106	10	18	osteoblast proliferation
GO:0048147	0.003	4.243	4.106	10	18	negative regulation of fibroblast proliferation
GO:0006366	0.003	1.230	254.110	292	1114	transcription from RNA polymerase II promoter
GO:0006357	0.003	1.253	207.349	242	909	regulation of transcription from RNA polymerase II promoter
GO:0001999	0.003	Inf	0.912	4	4	renal response to blood flow involved in circulatory renin-angiotensin regulation of systemic arterial blood pressure
GO:0003174	0.003	Inf	0.912	4	4	mitral valve development
GO:0003183	0.003	Inf	0.912	4	4	mitral valve morphogenesis
GO:0018076	0.003	Inf	0.912	4	4	N-terminal peptidyl-lysine acetylation
GO:0000075	0.003	1.547	49.043	67	215	cell cycle checkpoint
GO:0060255	0.003	1.150	717.622	773	3146	regulation of macromolecule metabolic process
GO:0080090	0.003	1.148	742.258	798	3254	regulation of primary metabolic process
GO:0000375	0.003	1.597	41.515	58	182	RNA splicing, via transesterification reactions
GO:0006260	0.003	1.524	51.780	70	227	DNA replication
GO:0036296	0.003	3.735	4.790	11	21	response to increased oxygen levels
GO:0055093	0.003	3.735	4.790	11	21	response to hyperoxia
GO:0031442	0.003	16.952	1.369	5	6	positive regulation of mRNA 3'-end processing
GO:0033689	0.003	16.952	1.369	5	6	negative regulation of osteoblast proliferation
GO:0033157	0.003	1.746	28.285	42	124	regulation of intracellular protein transport
GO:0046822	0.003	1.746	28.285	42	124	regulation of nucleocytoplasmic transport
GO:0009890	0.003	1.267	179.063	211	785	negative regulation of biosynthetic process
GO:0031145	0.003	2.028	17.108	28	75	anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0051320	0.003	1.705	30.794	45	135	S phase
GO:0050794	0.003	1.136	1355.864	1415	5944	regulation of cellular process
GO:0048666	0.003	1.294	146.900	176	644	neuron development
GO:0007091	0.003	2.718	8.212	16	36	mitotic metaphase/anaphase transition
GO:0034329	0.003	1.671	33.304	48	146	cell junction assembly
GO:0051186	0.003	1.542	47.674	65	209	cofactor metabolic process
GO:0051187	0.003	2.831	7.528	15	33	cofactor catabolic process
GO:0008380	0.003	1.471	60.676	80	266	RNA splicing
GO:0042060	0.004	1.314	126.143	153	553	wound healing
GO:0051351	0.004	1.974	18.020	29	79	positive regulation of ligase activity
GO:0051438	0.004	1.919	19.617	31	86	regulation of ubiquitin-protein ligase activity
GO:0055012	0.004	4.363	3.650	9	16	ventricular cardiac muscle cell differentiation
GO:0006084	0.004	2.392	10.493	19	46	acetyl-CoA metabolic process
GO:0051656	0.004	1.879	20.530	32	90	establishment of organelle localization
GO:0009894	0.004	1.366	91.243	114	400	regulation of catabolic process
GO:0051704	0.004	1.239	208.945	242	916	multi-organism process
GO:0045184	0.004	1.226	234.265	269	1027	establishment of protein localization
GO:0006473	0.004	1.748	26.232	39	115	protein acetylation
GO:0090304	0.004	1.141	743.626	797	3260	nucleic acid metabolic process
GO:0031396	0.004	1.652	32.847	47	144	regulation of protein ubiquitination
GO:0071901	0.004	1.997	16.652	27	73	negative regulation of protein serine/threonine kinase activity
GO:0044281	0.004	1.169	443.211	488	1943	small molecule metabolic process
GO:0009060	0.004	2.512	9.124	17	40	aerobic respiration
GO:0055015	0.004	5.936	2.509	7	11	ventricular cardiac muscle cell development
GO:0071844	0.004	1.243	197.996	230	868	cellular component assembly at cellular level
GO:0016071	0.004	1.317	116.790	142	512	mRNA metabolic process
GO:0030330	0.005	1.749	25.548	38	112	DNA damage response, signal transduction by p53 class mediator
GO:0000122	0.005	1.372	85.312	107	374	negative regulation of transcription from RNA polymerase II promoter
GO:0045598	0.005	2.266	11.405	20	50	regulation of fat cell differentiation
GO:0015031	0.005	1.224	227.422	261	997	protein transport
GO:0071241	0.005	1.891	19.161	30	84	cellular response to inorganic substance
GO:0071156	0.005	1.479	53.605	71	235	regulation of cell cycle arrest
GO:0032092	0.005	2.797	7.071	14	31	positive regulation of protein binding
GO:0006099	0.005	3.134	5.703	12	25	tricarboxylic acid cycle
GO:0072331	0.005	1.726	26.460	39	116	signal transduction by p53 class mediator
GO:0055006	0.005	2.943	6.387	13	28	cardiac cell development
GO:0055013	0.005	2.943	6.387	13	28	cardiac muscle cell development

CC test: Under-representation

Gene to GO CC test for under representation
GOCCID	Pvalue	OddsRatio	ExpCount	Count	Size	Term
GO:0005886	0.000	0.751	689.775	582	3075	plasma membrane
GO:0034702	0.000	0.228	35.891	10	160	ion channel complex
GO:0031224	0.000	0.760	742.714	634	3311	intrinsic to membrane
GO:0071944	0.000	0.764	702.561	600	3132	cell periphery
GO:0016021	0.000	0.771	725.666	624	3235	integral to membrane
GO:0005887	0.000	0.659	247.422	182	1103	integral to plasma membrane
GO:0031226	0.000	0.663	253.030	187	1128	intrinsic to plasma membrane
GO:0044459	0.000	0.742	394.798	322	1760	plasma membrane part
GO:0044425	0.000	0.804	894.576	798	3988	membrane part
GO:0034703	0.000	0.242	23.778	7	106	cation channel complex
GO:0008076	0.001	0.250	13.235	4	59	voltage-gated potassium channel complex
GO:0034705	0.001	0.250	13.235	4	59	potassium channel complex

CC test: Over-representation

Gene to GO CC test for over representation
GOCCID	Pvalue	OddsRatio	ExpCount	Count	Size	Term
GO:0044424	0.000	1.978	1978.252	2192	8819	intracellular part
GO:0005622	0.000	2.023	2019.526	2227	9003	intracellular
GO:0005737	0.000	1.696	1535.674	1779	6846	cytoplasm
GO:0044444	0.000	1.605	1158.597	1393	5165	cytoplasmic part
GO:0043227	0.000	1.566	1563.265	1769	6969	membrane-bounded organelle
GO:0043229	0.000	1.592	1717.820	1913	7658	intracellular organelle
GO:0043231	0.000	1.557	1561.471	1765	6961	intracellular membrane-bounded organelle
GO:0043226	0.000	1.590	1720.736	1915	7671	organelle
GO:0044422	0.000	1.517	1072.684	1277	4782	organelle part
GO:0044446	0.000	1.515	1057.879	1261	4716	intracellular organelle part
GO:0031974	0.000	1.503	493.049	627	2198	membrane-enclosed lumen
GO:0043233	0.000	1.474	484.300	610	2159	organelle lumen
GO:0070013	0.000	1.469	474.430	597	2115	intracellular organelle lumen
GO:0005829	0.000	1.472	443.699	561	1978	cytosol
GO:0044428	0.000	1.436	451.999	563	2015	nuclear part
GO:0044464	0.000	1.590	2297.455	2376	10242	cell part
GO:0005623	0.000	1.588	2297.679	2376	10243	cell
GO:0031981	0.000	1.409	385.377	478	1718	nuclear lumen
GO:0031090	0.000	1.393	394.125	485	1757	organelle membrane
GO:0005654	0.000	1.455	279.050	357	1244	nucleoplasm
GO:0031967	0.000	1.659	137.731	195	614	organelle envelope
GO:0005739	0.000	1.478	248.319	322	1107	mitochondrion
GO:0005634	0.000	1.276	980.714	1097	4372	nucleus
GO:0031975	0.000	1.627	139.525	195	622	envelope
GO:0044429	0.000	1.643	126.290	178	563	mitochondrial part
GO:0005794	0.000	1.403	199.866	252	891	Golgi apparatus
GO:0043228	0.000	1.256	524.677	601	2339	non-membrane-bounded organelle
GO:0043232	0.000	1.256	524.677	601	2339	intracellular non-membrane-bounded organelle
GO:0043234	0.000	1.239	565.279	641	2520	protein complex
GO:0005635	0.000	1.799	51.593	78	230	nuclear envelope
GO:0031966	0.000	1.587	83.670	116	373	mitochondrial membrane
GO:0032991	0.000	1.215	668.465	745	2980	macromolecular complex
GO:0005775	0.000	4.633	6.281	16	28	vacuolar lumen
GO:0031965	0.000	2.019	31.853	52	142	nuclear membrane
GO:0005740	0.000	1.551	87.932	120	392	mitochondrial envelope
GO:0043202	0.000	4.737	5.832	15	26	lysosomal lumen
GO:0031970	0.000	3.189	10.319	22	46	organelle envelope lumen
GO:0044451	0.000	1.392	149.171	188	665	nucleoplasm part
GO:0005811	0.000	3.476	8.524	19	38	lipid particle
GO:0044420	0.000	1.943	30.731	49	137	extracellular matrix part
GO:0005759	0.000	1.682	51.817	75	231	mitochondrial matrix
GO:0005758	0.000	3.302	8.748	19	39	mitochondrial intermembrane space
GO:0005856	0.000	1.269	293.631	344	1309	cytoskeleton
GO:0012505	0.000	1.261	298.342	348	1330	endomembrane system
GO:0005938	0.000	1.854	32.975	51	147	cell cortex
GO:0016604	0.000	1.647	51.144	73	228	nuclear body
GO:0000922	0.001	2.377	15.478	28	69	spindle pole
GO:0000323	0.001	1.605	55.631	78	248	lytic vacuole
GO:0005764	0.001	1.605	55.631	78	248	lysosome
GO:0031012	0.001	1.515	73.576	99	328	extracellular matrix
GO:0005876	0.001	3.127	8.524	18	38	spindle microtubule
GO:0034399	0.001	2.270	17.048	30	76	nuclear periphery
GO:0015630	0.001	1.350	147.376	182	657	microtubule cytoskeleton
GO:0044430	0.001	1.292	207.045	247	923	cytoskeletal part
GO:0000139	0.001	1.447	90.624	118	404	Golgi membrane
GO:0005604	0.001	2.348	15.029	27	67	basement membrane
GO:0016363	0.001	2.348	15.029	27	67	nuclear matrix
GO:0005743	0.001	1.557	58.995	81	263	mitochondrial inner membrane
GO:0019866	0.001	1.530	64.155	87	286	organelle inner membrane
GO:0005773	0.001	1.512	66.174	89	295	vacuole
GO:0044427	0.001	1.422	93.316	120	416	chromosomal part
GO:0005789	0.001	1.354	127.412	158	568	endoplasmic reticulum membrane
GO:0005643	0.001	2.384	13.235	24	59	nuclear pore
GO:0048471	0.001	1.435	85.689	111	382	perinuclear region of cytoplasm
GO:0015629	0.001	1.497	66.622	89	297	actin cytoskeleton
GO:0030175	0.002	2.640	9.870	19	44	filopodium
GO:0044437	0.002	1.695	35.666	52	159	vacuolar part
GO:0043034	0.002	5.202	3.365	9	15	costamere
GO:0005578	0.002	1.498	60.566	81	270	proteinaceous extracellular matrix
GO:0005783	0.002	1.258	208.166	244	928	endoplasmic reticulum
GO:0005827	0.003	Inf	0.897	4	4	polar microtubule
GO:0005663	0.003	17.322	1.346	5	6	DNA replication factor C complex
GO:0042175	0.003	1.314	130.104	158	580	nuclear outer membrane-endoplasmic reticulum membrane network
GO:0005657	0.004	2.858	6.954	14	31	replication fork
GO:0031252	0.004	1.526	46.434	63	207	cell leading edge

Visualisation

Expression Plot

Correlation Table

Venn Diagram :